miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 80303 1.15 0.002337
Target:  5'- uGGCGUUGAAGCGCUCACGGUAGACGCg -3'
miRNA:   3'- -CCGCAACUUCGCGAGUGCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 15235 0.85 0.1954
Target:  5'- cGGCGUUGAGGCcccGCUCGCaGUGGGcCGCg -3'
miRNA:   3'- -CCGCAACUUCG---CGAGUGcCAUCU-GCG- -5'
23617 5' -52.9 NC_005261.1 + 98004 0.8 0.356836
Target:  5'- aGGCGgcgGggGCGCUgGCGGcgaggcuggAGACGCc -3'
miRNA:   3'- -CCGCaa-CuuCGCGAgUGCCa--------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 82870 0.79 0.406447
Target:  5'- aGGCGgcGAcGGCGCUgGCGGUGGccucgccGCGCg -3'
miRNA:   3'- -CCGCaaCU-UCGCGAgUGCCAUC-------UGCG- -5'
23617 5' -52.9 NC_005261.1 + 90211 0.77 0.481148
Target:  5'- gGGCGgcGGAGCGCccucgCGCGGcgggcGGGCGCg -3'
miRNA:   3'- -CCGCaaCUUCGCGa----GUGCCa----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 104204 0.77 0.481148
Target:  5'- cGGCGUccAGGCGCUCGCGcgcGGCGCg -3'
miRNA:   3'- -CCGCAacUUCGCGAGUGCcauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 122913 0.77 0.510477
Target:  5'- cGGCGUUGGAGCGCacgccgagcagCGCGGcc-GCGCg -3'
miRNA:   3'- -CCGCAACUUCGCGa----------GUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 53947 0.77 0.52042
Target:  5'- cGGCGc-GccGCGCUCGCGGguucgGGugGCa -3'
miRNA:   3'- -CCGCaaCuuCGCGAGUGCCa----UCugCG- -5'
23617 5' -52.9 NC_005261.1 + 41654 0.76 0.530438
Target:  5'- cGCGUgGAGGCgGCUCAUG-UAGGCGCu -3'
miRNA:   3'- cCGCAaCUUCG-CGAGUGCcAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 75583 0.76 0.550677
Target:  5'- cGGCGgcGcGGCGCUCGCGcGcgccgcGGACGCg -3'
miRNA:   3'- -CCGCaaCuUCGCGAGUGC-Ca-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 83657 0.75 0.591793
Target:  5'- cGGCG-UGAGGCGgaCGCGcGccUGGGCGCg -3'
miRNA:   3'- -CCGCaACUUCGCgaGUGC-C--AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 81349 0.75 0.602166
Target:  5'- cGGCGggGcGGGgGCUUGCGGgGGGCGCc -3'
miRNA:   3'- -CCGCaaC-UUCgCGAGUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 118371 0.75 0.602166
Target:  5'- gGGCGcUGggGCGC--GCGGcccgAGGCGCu -3'
miRNA:   3'- -CCGCaACuuCGCGagUGCCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 127746 0.75 0.612562
Target:  5'- uGGCGgcgGGAGCGggcCGCGGcGGGCGCg -3'
miRNA:   3'- -CCGCaa-CUUCGCga-GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 121028 0.75 0.612562
Target:  5'- uGGCGcgggaGAAGCGCcgccacacgUCGCGGUuguGGCGCg -3'
miRNA:   3'- -CCGCaa---CUUCGCG---------AGUGCCAu--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 103872 0.75 0.612562
Target:  5'- cGGCGggGcGGCGC-CGcCGGgcGGCGCg -3'
miRNA:   3'- -CCGCaaCuUCGCGaGU-GCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 91411 0.75 0.633391
Target:  5'- cGGCGaggacgUGGAGCGCgacgccgcCGCGGUGaACGCg -3'
miRNA:   3'- -CCGCa-----ACUUCGCGa-------GUGCCAUcUGCG- -5'
23617 5' -52.9 NC_005261.1 + 80649 0.74 0.643809
Target:  5'- cGGCGaguagcUGguGUGCUCGCGGUGcGCGCc -3'
miRNA:   3'- -CCGCa-----ACuuCGCGAGUGCCAUcUGCG- -5'
23617 5' -52.9 NC_005261.1 + 77253 0.74 0.654216
Target:  5'- gGGCucaaaagGgcGCGCUCGCGGgcGGCGUc -3'
miRNA:   3'- -CCGcaa----CuuCGCGAGUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 137036 0.73 0.709873
Target:  5'- cGGCGUcggUGGAGgGCggaccgucggcaggCGCGG-AGGCGCg -3'
miRNA:   3'- -CCGCA---ACUUCgCGa-------------GUGCCaUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.