miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 12427 0.71 0.820706
Target:  5'- gGGCGgcGGAGgGCUUGCGGcgucGGcCGCg -3'
miRNA:   3'- -CCGCaaCUUCgCGAGUGCCa---UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 107682 0.71 0.829344
Target:  5'- gGGCGUUGc--CGC-CGCGGcggGGGCGCc -3'
miRNA:   3'- -CCGCAACuucGCGaGUGCCa--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 76422 0.71 0.829344
Target:  5'- cGCGUgcaGAgcgccGGCGC-CAUGGcGGACGCg -3'
miRNA:   3'- cCGCAa--CU-----UCGCGaGUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 46672 0.71 0.829344
Target:  5'- cGCGUUGGccgcGCGCUcCACGGcGGcCGCc -3'
miRNA:   3'- cCGCAACUu---CGCGA-GUGCCaUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 95807 0.71 0.829344
Target:  5'- cGGCGccGGcgGGgGCUCGCGGUccucgcGGCGCu -3'
miRNA:   3'- -CCGCaaCU--UCgCGAGUGCCAu-----CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 56017 0.71 0.837796
Target:  5'- gGGCGggGAAGaCGCaaUCGCGcccguGACGCg -3'
miRNA:   3'- -CCGCaaCUUC-GCG--AGUGCcau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 102742 0.71 0.837796
Target:  5'- gGGCGUUcuucaGGGCGCUUGCcGcGGACGCg -3'
miRNA:   3'- -CCGCAAc----UUCGCGAGUGcCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 23477 0.7 0.846054
Target:  5'- cGGCGgcGAGuGCGCgggcccgcCugGGcAGGCGCg -3'
miRNA:   3'- -CCGCaaCUU-CGCGa-------GugCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 19595 0.7 0.846054
Target:  5'- uGCGUgUGcAGGUcCUCGCGGUAG-CGCg -3'
miRNA:   3'- cCGCA-AC-UUCGcGAGUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 89178 0.7 0.852515
Target:  5'- cGCGgacaaccUGGAGcCGCUCGCGGgcgccgaggccGACGCg -3'
miRNA:   3'- cCGCa------ACUUC-GCGAGUGCCau---------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 70507 0.7 0.85411
Target:  5'- uGGCGUUc-GGCGC-CACGG-GGACGa -3'
miRNA:   3'- -CCGCAAcuUCGCGaGUGCCaUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 21702 0.7 0.85411
Target:  5'- cGCGggcGAGCGCuUCACGGaGGACuGCu -3'
miRNA:   3'- cCGCaacUUCGCG-AGUGCCaUCUG-CG- -5'
23617 5' -52.9 NC_005261.1 + 17738 0.7 0.85411
Target:  5'- cGGCGcucGGAGCGggCggacuucugggGCGGUGGugGCg -3'
miRNA:   3'- -CCGCaa-CUUCGCgaG-----------UGCCAUCugCG- -5'
23617 5' -52.9 NC_005261.1 + 19254 0.7 0.861959
Target:  5'- gGGCGcUGAacAGCGCgCGCGGgu-ACGCc -3'
miRNA:   3'- -CCGCaACU--UCGCGaGUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 82161 0.7 0.861959
Target:  5'- cGCGccaGcAAGCGCggCGCGGaAGGCGCg -3'
miRNA:   3'- cCGCaa-C-UUCGCGa-GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 87116 0.7 0.861959
Target:  5'- cGGCGUUguaGAAGgGC-CGCGGgu-ACGCg -3'
miRNA:   3'- -CCGCAA---CUUCgCGaGUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 88601 0.7 0.861959
Target:  5'- cGGCccgGcGGCGC-CACGGUcguGACGCu -3'
miRNA:   3'- -CCGcaaCuUCGCGaGUGCCAu--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 72446 0.7 0.861959
Target:  5'- cGGCG--GggGCGCcCGCGGcgAG-CGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGaGUGCCa-UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 48430 0.7 0.869592
Target:  5'- aGGCGguaca--GCUCGCGGUGcGugGCg -3'
miRNA:   3'- -CCGCaacuucgCGAGUGCCAU-CugCG- -5'
23617 5' -52.9 NC_005261.1 + 2127 0.7 0.869592
Target:  5'- cGCGccGAGcGCGCUCACGuccGGCGCg -3'
miRNA:   3'- cCGCaaCUU-CGCGAGUGCcauCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.