miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 13122 0.69 0.897864
Target:  5'- cGGCGgccgcGggGCGCgugugguCGGUGacGGCGCg -3'
miRNA:   3'- -CCGCaa---CuuCGCGagu----GCCAU--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 14964 0.69 0.904344
Target:  5'- gGGCGUgccUGggGCGaCUgCGCGGcc-GCGCc -3'
miRNA:   3'- -CCGCA---ACuuCGC-GA-GUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 70177 0.69 0.904344
Target:  5'- gGGCGcgGGAGCgGC-CGCuGUGGAgGCg -3'
miRNA:   3'- -CCGCaaCUUCG-CGaGUGcCAUCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 76738 0.69 0.904344
Target:  5'- uGGCc--GAcGUGCUCGCGGacguGGCGCa -3'
miRNA:   3'- -CCGcaaCUuCGCGAGUGCCau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 132891 0.69 0.904344
Target:  5'- cGGCaagccGGGCGC-CGCGGgcGGCGCc -3'
miRNA:   3'- -CCGcaac-UUCGCGaGUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 30343 0.69 0.909353
Target:  5'- uGGCGgcc--GCGCUCGCGGcccugaaggccGGCGCg -3'
miRNA:   3'- -CCGCaacuuCGCGAGUGCCau---------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 101699 0.69 0.910581
Target:  5'- gGGCGUggucGAAGCGCUCcagcuGCGccAG-CGCg -3'
miRNA:   3'- -CCGCAa---CUUCGCGAG-----UGCcaUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 80067 0.69 0.910581
Target:  5'- gGGCGcggGggGCGUgggggaCGCGGaccGGCGCg -3'
miRNA:   3'- -CCGCaa-CuuCGCGa-----GUGCCau-CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 90172 0.68 0.916573
Target:  5'- aGGCGgagGggGgGgaCGgGGaGGACGCa -3'
miRNA:   3'- -CCGCaa-CuuCgCgaGUgCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 47753 0.68 0.922318
Target:  5'- uGGCGUcguccaccccGAGGCGCgUCuccCGGUAGAaGCg -3'
miRNA:   3'- -CCGCAa---------CUUCGCG-AGu--GCCAUCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 12015 0.68 0.922318
Target:  5'- -cCG-UGAAGCGCUCGCccgcGACGCg -3'
miRNA:   3'- ccGCaACUUCGCGAGUGccauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 83751 0.68 0.922318
Target:  5'- aGGUGgcGgcGCGC-CACGGccgGGuCGCa -3'
miRNA:   3'- -CCGCaaCuuCGCGaGUGCCa--UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 23420 0.68 0.922318
Target:  5'- -aCGgcGAGGCGCUgCGCGucgGGGCGCc -3'
miRNA:   3'- ccGCaaCUUCGCGA-GUGCca-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 86374 0.68 0.922318
Target:  5'- cGCGUcGcAGCGCUC-CaGGUAGAagaGCa -3'
miRNA:   3'- cCGCAaCuUCGCGAGuG-CCAUCUg--CG- -5'
23617 5' -52.9 NC_005261.1 + 87879 0.68 0.922318
Target:  5'- uGGCGgagaGAGGCGCggagaggGCGGgccGGGCGUa -3'
miRNA:   3'- -CCGCaa--CUUCGCGag-----UGCCa--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43637 0.68 0.922318
Target:  5'- gGGCGcccgUGuGGCGCg-GCGGU-GACGUg -3'
miRNA:   3'- -CCGCa---ACuUCGCGagUGCCAuCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 4825 0.68 0.927816
Target:  5'- cGCGUUG-GGCGCagGCGGc-GGCGUc -3'
miRNA:   3'- cCGCAACuUCGCGagUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 69744 0.68 0.927816
Target:  5'- aGGCGgaggagGAGGCGagCGCGGgGGGCGg -3'
miRNA:   3'- -CCGCaa----CUUCGCgaGUGCCaUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 74818 0.68 0.927816
Target:  5'- uGGCGgaggUGGccgccGUGCUCGCGGaccuggGGAgGCg -3'
miRNA:   3'- -CCGCa---ACUu----CGCGAGUGCCa-----UCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 121124 0.68 0.927816
Target:  5'- gGGCGcgGAGGCGCgggCGCGa---GCGCg -3'
miRNA:   3'- -CCGCaaCUUCGCGa--GUGCcaucUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.