miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 43270 0.66 0.969773
Target:  5'- uGCGUUcGggGCGUcgcggccgccuuuccCGCGGgGGGCGCc -3'
miRNA:   3'- cCGCAA-CuuCGCGa--------------GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 133128 0.66 0.969473
Target:  5'- cGGCGUgc--GCGuCUCccuGCGGUGcGCGCu -3'
miRNA:   3'- -CCGCAacuuCGC-GAG---UGCCAUcUGCG- -5'
23617 5' -52.9 NC_005261.1 + 73213 0.66 0.969473
Target:  5'- gGGCGccucGAGGgGC--GCGGUGGcCGCg -3'
miRNA:   3'- -CCGCaa--CUUCgCGagUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 110533 0.66 0.969473
Target:  5'- gGGCGcagGAgGGCGCgcgCACGGaccAGGcCGCa -3'
miRNA:   3'- -CCGCaa-CU-UCGCGa--GUGCCa--UCU-GCG- -5'
23617 5' -52.9 NC_005261.1 + 125918 0.66 0.969473
Target:  5'- uGGCGggGcucgccaCGCgCACGGUAGcCGCu -3'
miRNA:   3'- -CCGCaaCuuc----GCGaGUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 27359 0.66 0.969473
Target:  5'- cGGCGccgGAccGGCGCgaggC-CGGUGGGCa- -3'
miRNA:   3'- -CCGCaa-CU--UCGCGa---GuGCCAUCUGcg -5'
23617 5' -52.9 NC_005261.1 + 31453 0.66 0.969473
Target:  5'- cGGCGagGAcgAGCGCcgGCGGccugAGugGCc -3'
miRNA:   3'- -CCGCaaCU--UCGCGagUGCCa---UCugCG- -5'
23617 5' -52.9 NC_005261.1 + 68240 0.66 0.969473
Target:  5'- cGGCGggGgcGUGUUCGUGGacugccuGGCGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGAGUGCCau-----CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 69537 0.66 0.969473
Target:  5'- gGGCGcUGgcGCGCgcgCugGGgacGGCGg -3'
miRNA:   3'- -CCGCaACuuCGCGa--GugCCau-CUGCg -5'
23617 5' -52.9 NC_005261.1 + 70974 0.66 0.969473
Target:  5'- cGGCGaaGAagAGCGCguggcgCGCGGgcGGcCGCc -3'
miRNA:   3'- -CCGCaaCU--UCGCGa-----GUGCCauCU-GCG- -5'
23617 5' -52.9 NC_005261.1 + 106647 0.66 0.969473
Target:  5'- cGGCGacGucGCGCUCGCc---GGCGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGAGUGccauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 35431 0.66 0.969473
Target:  5'- cGGCa--GAAGCGCccgcccgcccCGCGGgucUAGGCGCg -3'
miRNA:   3'- -CCGcaaCUUCGCGa---------GUGCC---AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 104992 0.66 0.969473
Target:  5'- cGGCGccc-AGCGCgggCgGCGGUcgGGGCGCc -3'
miRNA:   3'- -CCGCaacuUCGCGa--G-UGCCA--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 424 0.66 0.966349
Target:  5'- cGCGacGggGUGCcCACGGaccgGGACGg -3'
miRNA:   3'- cCGCaaCuuCGCGaGUGCCa---UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 23736 0.66 0.966349
Target:  5'- cGCGccGAGGCGCgUC-CGGgagGGGCGg -3'
miRNA:   3'- cCGCaaCUUCGCG-AGuGCCa--UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 47480 0.66 0.966349
Target:  5'- gGGCGaUGucGGCgaaGCUC-CGGUAGAaGCg -3'
miRNA:   3'- -CCGCaACu-UCG---CGAGuGCCAUCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 60338 0.66 0.966349
Target:  5'- cGGUGuUUGcGGCGC-CGCGGcc-GCGCg -3'
miRNA:   3'- -CCGC-AACuUCGCGaGUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 138095 0.66 0.966349
Target:  5'- cGCGacGggGUGCcCACGGaccgGGACGg -3'
miRNA:   3'- cCGCaaCuuCGCGaGUGCCa---UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 81431 0.66 0.966349
Target:  5'- cGGCGUcGucGGcCGCccCGCGGcGGGCGCc -3'
miRNA:   3'- -CCGCAaCu-UC-GCGa-GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 82962 0.66 0.966349
Target:  5'- gGGCGgaagacgUGguGCGCgucgagCACGG-AGGCGg -3'
miRNA:   3'- -CCGCa------ACuuCGCGa-----GUGCCaUCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.