miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 14365 0.67 0.955247
Target:  5'- cGCGgccGggGCGg-CGCGGUggcccgcaucgccAGACGCu -3'
miRNA:   3'- cCGCaa-CuuCGCgaGUGCCA-------------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 5520 0.67 0.954455
Target:  5'- cGGCGgcGAGGCcgccgGCUUcggcgcgcagcgagACGGgGGGCGCc -3'
miRNA:   3'- -CCGCaaCUUCG-----CGAG--------------UGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 16934 0.67 0.951608
Target:  5'- uGGCGUUGuacguGCGCUCGuucc-GGCGCa -3'
miRNA:   3'- -CCGCAACuu---CGCGAGUgccauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 116011 0.67 0.951608
Target:  5'- aGGCGgccUGAgccgccgacGGCGCgCAUGGUcuGCGCc -3'
miRNA:   3'- -CCGCa--ACU---------UCGCGaGUGCCAucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 120941 0.67 0.951608
Target:  5'- gGGCGcgggaaggUGGAG-GCUCGCGccccgcgGGGCGCg -3'
miRNA:   3'- -CCGCa-------ACUUCgCGAGUGCca-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 126965 0.67 0.951608
Target:  5'- gGGCGgc--AGCGCgaaccgCGCGGgGGACGg -3'
miRNA:   3'- -CCGCaacuUCGCGa-----GUGCCaUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 53449 0.67 0.951608
Target:  5'- gGGCGUcggGAGGuCGC---CGGgcgGGACGCa -3'
miRNA:   3'- -CCGCAa--CUUC-GCGaguGCCa--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 59811 0.67 0.951608
Target:  5'- cGGCGU---GGCGC-CGCGuGUAG-UGCa -3'
miRNA:   3'- -CCGCAacuUCGCGaGUGC-CAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 75826 0.67 0.951608
Target:  5'- cGGCGcgGccGCGCcCGgGGagGGGCGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGaGUgCCa-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 110455 0.67 0.951608
Target:  5'- gGGCGUUuGGGUGC-CugGGcGGGCuGCu -3'
miRNA:   3'- -CCGCAAcUUCGCGaGugCCaUCUG-CG- -5'
23617 5' -52.9 NC_005261.1 + 29402 0.67 0.947337
Target:  5'- aGGCGgccgcGCGCUaCGCGGcGGcCGCg -3'
miRNA:   3'- -CCGCaacuuCGCGA-GUGCCaUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 53481 0.67 0.947337
Target:  5'- aGGCGcgcacuAGCGCUCGCGccAGGgGCu -3'
miRNA:   3'- -CCGCaacu--UCGCGAGUGCcaUCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 17098 0.67 0.947337
Target:  5'- uGGUGUgccAGCGCUCGauGUAGuuguauCGCg -3'
miRNA:   3'- -CCGCAacuUCGCGAGUgcCAUCu-----GCG- -5'
23617 5' -52.9 NC_005261.1 + 88733 0.67 0.947337
Target:  5'- cGCGaUGAGG-GC-CAgcUGGUGGACGCc -3'
miRNA:   3'- cCGCaACUUCgCGaGU--GCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 100950 0.67 0.947337
Target:  5'- cGCGUccacGGCGCgCGCGGUcucguggaAGGCGCc -3'
miRNA:   3'- cCGCAacu-UCGCGaGUGCCA--------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 127812 0.67 0.947337
Target:  5'- cGGCGgcGGGccgcucGCGCUCGCGGc---CGCg -3'
miRNA:   3'- -CCGCaaCUU------CGCGAGUGCCaucuGCG- -5'
23617 5' -52.9 NC_005261.1 + 107257 0.67 0.947337
Target:  5'- cGCG--GgcGCGCgggCACGGgcGGGCGCg -3'
miRNA:   3'- cCGCaaCuuCGCGa--GUGCCa-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43375 0.67 0.946897
Target:  5'- cGGCGgcaucGGC-CUCGCGGUgccggcaccguccAGGCGCc -3'
miRNA:   3'- -CCGCaacu-UCGcGAGUGCCA-------------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 20288 0.68 0.942825
Target:  5'- cGCGggGgcGCGCUUGCGGcAGAaaaacgGCg -3'
miRNA:   3'- cCGCaaCuuCGCGAGUGCCaUCUg-----CG- -5'
23617 5' -52.9 NC_005261.1 + 135099 0.68 0.942825
Target:  5'- cGGCGgcGGAGCGCgagGCGGacccCGCg -3'
miRNA:   3'- -CCGCaaCUUCGCGag-UGCCaucuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.