miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 424 0.66 0.966349
Target:  5'- cGCGacGggGUGCcCACGGaccgGGACGg -3'
miRNA:   3'- cCGCaaCuuCGCGaGUGCCa---UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 1312 0.68 0.942825
Target:  5'- cGGCGgcGGcacGCGCUC-CGG--GACGCc -3'
miRNA:   3'- -CCGCaaCUu--CGCGAGuGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 2127 0.7 0.869592
Target:  5'- cGCGccGAGcGCGCUCACGuccGGCGCg -3'
miRNA:   3'- cCGCaaCUU-CGCGAGUGCcauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 2396 0.7 0.877005
Target:  5'- uGGCGgcGAGcGCGCcCGCGGgccccGCGCg -3'
miRNA:   3'- -CCGCaaCUU-CGCGaGUGCCauc--UGCG- -5'
23617 5' -52.9 NC_005261.1 + 2530 0.68 0.942825
Target:  5'- gGGCGgcaguaGGccgccAGCGC-CGCGGcgcUGGGCGCg -3'
miRNA:   3'- -CCGCaa----CU-----UCGCGaGUGCC---AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 3413 0.66 0.970662
Target:  5'- cGGCGggcUGAAGaGCgCGCGGgccagcguccaggcGGGCGCg -3'
miRNA:   3'- -CCGCa--ACUUCgCGaGUGCCa-------------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 3532 0.73 0.726048
Target:  5'- cGGCGgccgccucGGCGCgcagCGCGGcGGGCGCg -3'
miRNA:   3'- -CCGCaacu----UCGCGa---GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 3656 0.66 0.972384
Target:  5'- cGCGUcUGGAGCGCaggcCGCGGccggcAGGcCGCg -3'
miRNA:   3'- cCGCA-ACUUCGCGa---GUGCCa----UCU-GCG- -5'
23617 5' -52.9 NC_005261.1 + 4825 0.68 0.927816
Target:  5'- cGCGUUG-GGCGCagGCGGc-GGCGUc -3'
miRNA:   3'- cCGCAACuUCGCGagUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 5520 0.67 0.954455
Target:  5'- cGGCGgcGAGGCcgccgGCUUcggcgcgcagcgagACGGgGGGCGCc -3'
miRNA:   3'- -CCGCaaCUUCG-----CGAG--------------UGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 5734 0.68 0.938069
Target:  5'- cGGCGggaGAAGCGCgCGCGGaAGGUGa -3'
miRNA:   3'- -CCGCaa-CUUCGCGaGUGCCaUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 9628 0.67 0.959438
Target:  5'- aGGCGggGguGgGggCugGGUGGGCGg -3'
miRNA:   3'- -CCGCaaCuuCgCgaGugCCAUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 12015 0.68 0.922318
Target:  5'- -cCG-UGAAGCGCUCGCccgcGACGCg -3'
miRNA:   3'- ccGCaACUUCGCGAGUGccauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 12427 0.71 0.820706
Target:  5'- gGGCGgcGGAGgGCUUGCGGcgucGGcCGCg -3'
miRNA:   3'- -CCGCaaCUUCgCGAGUGCCa---UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 13122 0.69 0.897864
Target:  5'- cGGCGgccgcGggGCGCgugugguCGGUGacGGCGCg -3'
miRNA:   3'- -CCGCaa---CuuCGCGagu----GCCAU--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 13670 0.7 0.877005
Target:  5'- cGCGgggGggGCGCggggcgCGCGGgcgugGGGCGg -3'
miRNA:   3'- cCGCaa-CuuCGCGa-----GUGCCa----UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 14130 0.71 0.811891
Target:  5'- gGGCGgUGGgcAGuCGCUCGCGa-GGACGCu -3'
miRNA:   3'- -CCGCaACU--UC-GCGAGUGCcaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 14365 0.67 0.955247
Target:  5'- cGCGgccGggGCGg-CGCGGUggcccgcaucgccAGACGCu -3'
miRNA:   3'- cCGCaa-CuuCGCgaGUGCCA-------------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 14964 0.69 0.904344
Target:  5'- gGGCGUgccUGggGCGaCUgCGCGGcc-GCGCc -3'
miRNA:   3'- -CCGCA---ACuuCGC-GA-GUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 15235 0.85 0.1954
Target:  5'- cGGCGUUGAGGCcccGCUCGCaGUGGGcCGCg -3'
miRNA:   3'- -CCGCAACUUCG---CGAGUGcCAUCU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.