miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 16934 0.67 0.951608
Target:  5'- uGGCGUUGuacguGCGCUCGuucc-GGCGCa -3'
miRNA:   3'- -CCGCAACuu---CGCGAGUgccauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 17098 0.67 0.947337
Target:  5'- uGGUGUgccAGCGCUCGauGUAGuuguauCGCg -3'
miRNA:   3'- -CCGCAacuUCGCGAGUgcCAUCu-----GCG- -5'
23617 5' -52.9 NC_005261.1 + 17197 0.66 0.97509
Target:  5'- cGGCGgcGAgcAGCGCgcccagCACGGacAGcaGCGCc -3'
miRNA:   3'- -CCGCaaCU--UCGCGa-----GUGCCa-UC--UGCG- -5'
23617 5' -52.9 NC_005261.1 + 17738 0.7 0.85411
Target:  5'- cGGCGcucGGAGCGggCggacuucugggGCGGUGGugGCg -3'
miRNA:   3'- -CCGCaa-CUUCGCgaG-----------UGCCAUCugCG- -5'
23617 5' -52.9 NC_005261.1 + 18949 0.69 0.884191
Target:  5'- aGGCGg---GGUGCUCcgcagcucagugGCGGUgGGGCGCg -3'
miRNA:   3'- -CCGCaacuUCGCGAG------------UGCCA-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 19254 0.7 0.861959
Target:  5'- gGGCGcUGAacAGCGCgCGCGGgu-ACGCc -3'
miRNA:   3'- -CCGCaACU--UCGCGaGUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 19595 0.7 0.846054
Target:  5'- uGCGUgUGcAGGUcCUCGCGGUAG-CGCg -3'
miRNA:   3'- cCGCA-AC-UUCGcGAGUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 20288 0.68 0.942825
Target:  5'- cGCGggGgcGCGCUUGCGGcAGAaaaacgGCg -3'
miRNA:   3'- cCGCaaCuuCGCGAGUGCCaUCUg-----CG- -5'
23617 5' -52.9 NC_005261.1 + 21702 0.7 0.85411
Target:  5'- cGCGggcGAGCGCuUCACGGaGGACuGCu -3'
miRNA:   3'- cCGCaacUUCGCG-AGUGCCaUCUG-CG- -5'
23617 5' -52.9 NC_005261.1 + 22054 0.67 0.963005
Target:  5'- cGGCGggGuucAGGgGCUCcgGCGGggcucgaggGGGCGCc -3'
miRNA:   3'- -CCGCaaC---UUCgCGAG--UGCCa--------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 23420 0.68 0.922318
Target:  5'- -aCGgcGAGGCGCUgCGCGucgGGGCGCc -3'
miRNA:   3'- ccGCaaCUUCGCGA-GUGCca-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 23477 0.7 0.846054
Target:  5'- cGGCGgcGAGuGCGCgggcccgcCugGGcAGGCGCg -3'
miRNA:   3'- -CCGCaaCUU-CGCGa-------GugCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 23736 0.66 0.966349
Target:  5'- cGCGccGAGGCGCgUC-CGGgagGGGCGg -3'
miRNA:   3'- cCGCaaCUUCGCG-AGuGCCa--UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 24022 0.68 0.933066
Target:  5'- aGGgGgcGGAGCGCgggguUCG-GGUGGGCGUc -3'
miRNA:   3'- -CCgCaaCUUCGCG-----AGUgCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 24125 0.67 0.959438
Target:  5'- aGGCGggGguGgGggCugGGUGGGCGg -3'
miRNA:   3'- -CCGCaaCuuCgCgaGugCCAUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 27231 0.67 0.963005
Target:  5'- gGGUGaaggggGAGGCGC-CugGGgugGGGCGg -3'
miRNA:   3'- -CCGCaa----CUUCGCGaGugCCa--UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 27359 0.66 0.969473
Target:  5'- cGGCGccgGAccGGCGCgaggC-CGGUGGGCa- -3'
miRNA:   3'- -CCGCaa-CU--UCGCGa---GuGCCAUCUGcg -5'
23617 5' -52.9 NC_005261.1 + 28240 0.67 0.961606
Target:  5'- cGGCGcgcgcgauagcgGggGCuGCUCGgGG-GGGCGCu -3'
miRNA:   3'- -CCGCaa----------CuuCG-CGAGUgCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 28617 0.66 0.972384
Target:  5'- uGGCGgagcUGuGGCGC--AUGGUGGcCGCg -3'
miRNA:   3'- -CCGCa---ACuUCGCGagUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 28785 0.72 0.793762
Target:  5'- cGGCGc--GGGCGCUCGCGGccgcggcGGAgGCa -3'
miRNA:   3'- -CCGCaacUUCGCGAGUGCCa------UCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.