miRNA display CGI


Results 41 - 60 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 29402 0.67 0.947337
Target:  5'- aGGCGgccgcGCGCUaCGCGGcGGcCGCg -3'
miRNA:   3'- -CCGCaacuuCGCGA-GUGCCaUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 29962 0.69 0.883483
Target:  5'- aGGCGcuaGAGGCGg-CGCGGUGcgccgccGGCGCg -3'
miRNA:   3'- -CCGCaa-CUUCGCgaGUGCCAU-------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 30343 0.69 0.909353
Target:  5'- uGGCGgcc--GCGCUCGCGGcccugaaggccGGCGCg -3'
miRNA:   3'- -CCGCaacuuCGCGAGUGCCau---------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 31453 0.66 0.969473
Target:  5'- cGGCGagGAcgAGCGCcgGCGGccugAGugGCc -3'
miRNA:   3'- -CCGCaaCU--UCGCGagUGCCa---UCugCG- -5'
23617 5' -52.9 NC_005261.1 + 31947 0.73 0.715961
Target:  5'- cGGCGccaacguGCGCUaCACGGUGGccACGCg -3'
miRNA:   3'- -CCGCaacuu--CGCGA-GUGCCAUC--UGCG- -5'
23617 5' -52.9 NC_005261.1 + 32337 0.68 0.930996
Target:  5'- cGGCGUggccugggacgcgGAccAGgGCcCGCGGgAGACGCu -3'
miRNA:   3'- -CCGCAa------------CU--UCgCGaGUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 33749 0.67 0.959068
Target:  5'- cGGCGccGggGCcgggcccGCUCGCGGggccCGCg -3'
miRNA:   3'- -CCGCaaCuuCG-------CGAGUGCCaucuGCG- -5'
23617 5' -52.9 NC_005261.1 + 34366 0.66 0.97509
Target:  5'- gGGCGccgcGcGGCGC-CGCGcGcAGACGCg -3'
miRNA:   3'- -CCGCaa--CuUCGCGaGUGC-CaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 34486 0.67 0.958323
Target:  5'- cGGCGggUGcuggagugggucgaGGGCGCUC-UGGUGGGCa- -3'
miRNA:   3'- -CCGCa-AC--------------UUCGCGAGuGCCAUCUGcg -5'
23617 5' -52.9 NC_005261.1 + 35431 0.66 0.969473
Target:  5'- cGGCa--GAAGCGCccgcccgcccCGCGGgucUAGGCGCg -3'
miRNA:   3'- -CCGcaaCUUCGCGa---------GUGCC---AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 37989 0.67 0.95564
Target:  5'- cGCGUgGAcGCGCUaCGCGGcgcccgaGGACGUc -3'
miRNA:   3'- cCGCAaCUuCGCGA-GUGCCa------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 41654 0.76 0.530438
Target:  5'- cGCGUgGAGGCgGCUCAUG-UAGGCGCu -3'
miRNA:   3'- cCGCAaCUUCG-CGAGUGCcAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43270 0.66 0.969773
Target:  5'- uGCGUUcGggGCGUcgcggccgccuuuccCGCGGgGGGCGCc -3'
miRNA:   3'- cCGCAA-CuuCGCGa--------------GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43375 0.67 0.946897
Target:  5'- cGGCGgcaucGGC-CUCGCGGUgccggcaccguccAGGCGCc -3'
miRNA:   3'- -CCGCaacu-UCGcGAGUGCCA-------------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43637 0.68 0.922318
Target:  5'- gGGCGcccgUGuGGCGCg-GCGGU-GACGUg -3'
miRNA:   3'- -CCGCa---ACuUCGCGagUGCCAuCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43783 0.71 0.802907
Target:  5'- cGGCGcgcgGAgGGCGC-CGCGGgugaggGGGCGCc -3'
miRNA:   3'- -CCGCaa--CU-UCGCGaGUGCCa-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43830 0.66 0.97509
Target:  5'- cGUGgaGAAGCuGCUCGgcgaGGgcgaGGACGCg -3'
miRNA:   3'- cCGCaaCUUCG-CGAGUg---CCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 45617 0.69 0.891146
Target:  5'- cGGCGgcGcGGCGCggCGCGGcGGGCccGCg -3'
miRNA:   3'- -CCGCaaCuUCGCGa-GUGCCaUCUG--CG- -5'
23617 5' -52.9 NC_005261.1 + 46273 0.66 0.972384
Target:  5'- cGUGUccccGggGCGCUCuggcCGGgcaacGGCGCg -3'
miRNA:   3'- cCGCAa---CuuCGCGAGu---GCCau---CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 46672 0.71 0.829344
Target:  5'- cGCGUUGGccgcGCGCUcCACGGcGGcCGCc -3'
miRNA:   3'- cCGCAACUu---CGCGA-GUGCCaUCuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.