miRNA display CGI


Results 61 - 80 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 47480 0.66 0.966349
Target:  5'- gGGCGaUGucGGCgaaGCUC-CGGUAGAaGCg -3'
miRNA:   3'- -CCGCaACu-UCG---CGAGuGCCAUCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 47753 0.68 0.922318
Target:  5'- uGGCGUcguccaccccGAGGCGCgUCuccCGGUAGAaGCg -3'
miRNA:   3'- -CCGCAa---------CUUCGCG-AGu--GCCAUCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 48034 0.66 0.977597
Target:  5'- gGGCGagGAGcacGCGCgCGCGGUcgGGGCccGCg -3'
miRNA:   3'- -CCGCaaCUU---CGCGaGUGCCA--UCUG--CG- -5'
23617 5' -52.9 NC_005261.1 + 48430 0.7 0.869592
Target:  5'- aGGCGguaca--GCUCGCGGUGcGugGCg -3'
miRNA:   3'- -CCGCaacuucgCGAGUGCCAU-CugCG- -5'
23617 5' -52.9 NC_005261.1 + 48985 0.66 0.972384
Target:  5'- aGGCGU---AGUGC---CGGUAGAUGCc -3'
miRNA:   3'- -CCGCAacuUCGCGaguGCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 49261 0.66 0.977597
Target:  5'- cGGCGUcGgcGCGCacgucCGCGaGgaAGGCGCa -3'
miRNA:   3'- -CCGCAaCuuCGCGa----GUGC-Ca-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 52990 0.67 0.963005
Target:  5'- aGGCGggGGcGGCGCcCAgGcGUcGGCGCa -3'
miRNA:   3'- -CCGCaaCU-UCGCGaGUgC-CAuCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 53449 0.67 0.951608
Target:  5'- gGGCGUcggGAGGuCGC---CGGgcgGGACGCa -3'
miRNA:   3'- -CCGCAa--CUUC-GCGaguGCCa--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 53481 0.67 0.947337
Target:  5'- aGGCGcgcacuAGCGCUCGCGccAGGgGCu -3'
miRNA:   3'- -CCGCaacu--UCGCGAGUGCcaUCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 53947 0.77 0.52042
Target:  5'- cGGCGc-GccGCGCUCGCGGguucgGGugGCa -3'
miRNA:   3'- -CCGCaaCuuCGCGAGUGCCa----UCugCG- -5'
23617 5' -52.9 NC_005261.1 + 56017 0.71 0.837796
Target:  5'- gGGCGggGAAGaCGCaaUCGCGcccguGACGCg -3'
miRNA:   3'- -CCGCaaCUUC-GCG--AGUGCcau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 56116 0.72 0.784466
Target:  5'- aGCGgcgGGAGCGCgccgCAgGGcgggGGGCGCg -3'
miRNA:   3'- cCGCaa-CUUCGCGa---GUgCCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 57766 0.67 0.95564
Target:  5'- cGGCGcgaucugGAAGCaguccgcgGCgucgCGCGGcGGGCGCg -3'
miRNA:   3'- -CCGCaa-----CUUCG--------CGa---GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 58269 0.72 0.755766
Target:  5'- cGCGcucGccGCGCUCACGGggccGGCGCg -3'
miRNA:   3'- cCGCaa-CuuCGCGAGUGCCau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 59421 0.69 0.897864
Target:  5'- cGGCGcUGucGCGCggCcCGGcAGGCGCc -3'
miRNA:   3'- -CCGCaACuuCGCGa-GuGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 59618 0.66 0.977355
Target:  5'- cGGCGgauGAGCGCcaggaccUCGCGGUcgcuguccucgAGGCGg -3'
miRNA:   3'- -CCGCaacUUCGCG-------AGUGCCA-----------UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 59811 0.67 0.951608
Target:  5'- cGGCGU---GGCGC-CGCGuGUAG-UGCa -3'
miRNA:   3'- -CCGCAacuUCGCGaGUGC-CAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 60338 0.66 0.966349
Target:  5'- cGGUGuUUGcGGCGC-CGCGGcc-GCGCg -3'
miRNA:   3'- -CCGC-AACuUCGCGaGUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 63338 0.72 0.755766
Target:  5'- uGGCGcugcGAGGCccacggGUUCACGGUGG-CGCg -3'
miRNA:   3'- -CCGCaa--CUUCG------CGAGUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 66690 0.66 0.97509
Target:  5'- cGGCGgcGAucgagaaggccGCGCUCAgcgagcgcCGGUuGAUGCg -3'
miRNA:   3'- -CCGCaaCUu----------CGCGAGU--------GCCAuCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.