Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 67087 | 0.7 | 0.877005 |
Target: 5'- gGGCGguccauGGCGCgaCGCGGUGcgggcGGCGCg -3' miRNA: 3'- -CCGCaacu--UCGCGa-GUGCCAU-----CUGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 68240 | 0.66 | 0.969473 |
Target: 5'- cGGCGggGgcGUGUUCGUGGacugccuGGCGCg -3' miRNA: 3'- -CCGCaaCuuCGCGAGUGCCau-----CUGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 68741 | 0.69 | 0.884191 |
Target: 5'- cGGCGggaaGAAGCGCcCGCcg-GGGCGCc -3' miRNA: 3'- -CCGCaa--CUUCGCGaGUGccaUCUGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 69232 | 0.66 | 0.972384 |
Target: 5'- cGCGcUGggGCgGUUCGCcg-AGGCGCu -3' miRNA: 3'- cCGCaACuuCG-CGAGUGccaUCUGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 69537 | 0.66 | 0.969473 |
Target: 5'- gGGCGcUGgcGCGCgcgCugGGgacGGCGg -3' miRNA: 3'- -CCGCaACuuCGCGa--GugCCau-CUGCg -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 69744 | 0.68 | 0.927816 |
Target: 5'- aGGCGgaggagGAGGCGagCGCGGgGGGCGg -3' miRNA: 3'- -CCGCaa----CUUCGCgaGUGCCaUCUGCg -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 70177 | 0.69 | 0.904344 |
Target: 5'- gGGCGcgGGAGCgGC-CGCuGUGGAgGCg -3' miRNA: 3'- -CCGCaaCUUCG-CGaGUGcCAUCUgCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 70507 | 0.7 | 0.85411 |
Target: 5'- uGGCGUUc-GGCGC-CACGG-GGACGa -3' miRNA: 3'- -CCGCAAcuUCGCGaGUGCCaUCUGCg -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 70648 | 0.68 | 0.942825 |
Target: 5'- cGGCGcUGAgguucGGCGC-CGCGGccgcgGGcCGCa -3' miRNA: 3'- -CCGCaACU-----UCGCGaGUGCCa----UCuGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 70974 | 0.66 | 0.969473 |
Target: 5'- cGGCGaaGAagAGCGCguggcgCGCGGgcGGcCGCc -3' miRNA: 3'- -CCGCaaCU--UCGCGa-----GUGCCauCU-GCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 71179 | 0.69 | 0.891146 |
Target: 5'- cGCGUccgGgcGCaGCUCGCGG--GGCGCg -3' miRNA: 3'- cCGCAa--CuuCG-CGAGUGCCauCUGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 71964 | 0.7 | 0.877005 |
Target: 5'- cGGCGc-GggGCGCggagcgCGCGGcAGguGCGCa -3' miRNA: 3'- -CCGCaaCuuCGCGa-----GUGCCaUC--UGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 72446 | 0.7 | 0.861959 |
Target: 5'- cGGCG--GggGCGCcCGCGGcgAG-CGCg -3' miRNA: 3'- -CCGCaaCuuCGCGaGUGCCa-UCuGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 73213 | 0.66 | 0.969473 |
Target: 5'- gGGCGccucGAGGgGC--GCGGUGGcCGCg -3' miRNA: 3'- -CCGCaa--CUUCgCGagUGCCAUCuGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 74284 | 0.7 | 0.877005 |
Target: 5'- cGGCGggcGggGCGgUCGCcgccGGgcagcAGACGCg -3' miRNA: 3'- -CCGCaa-CuuCGCgAGUG----CCa----UCUGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 74480 | 0.69 | 0.884191 |
Target: 5'- cGGCGUgccUGGgcgggaucucGGCGCUCuuCGGggcGGCGCc -3' miRNA: 3'- -CCGCA---ACU----------UCGCGAGu-GCCau-CUGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 74755 | 0.67 | 0.95564 |
Target: 5'- uGGCGcgGcAGCGCgccacaggCGCGGaggucGACGCg -3' miRNA: 3'- -CCGCaaCuUCGCGa-------GUGCCau---CUGCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 74818 | 0.68 | 0.927816 |
Target: 5'- uGGCGgaggUGGccgccGUGCUCGCGGaccuggGGAgGCg -3' miRNA: 3'- -CCGCa---ACUu----CGCGAGUGCCa-----UCUgCG- -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 74865 | 0.7 | 0.877005 |
Target: 5'- gGGCGgagGAGGCGgaCGCGGc-GGCGg -3' miRNA: 3'- -CCGCaa-CUUCGCgaGUGCCauCUGCg -5' |
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23617 | 5' | -52.9 | NC_005261.1 | + | 75507 | 0.69 | 0.891146 |
Target: 5'- gGGCGcugGAGGCGCaCGCcGUGGuCGCc -3' miRNA: 3'- -CCGCaa-CUUCGCGaGUGcCAUCuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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