Results 101 - 120 of 189 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 75583 | 0.76 | 0.550677 |
Target: 5'- cGGCGgcGcGGCGCUCGCGcGcgccgcGGACGCg -3' miRNA: 3'- -CCGCaaCuUCGCGAGUGC-Ca-----UCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 75826 | 0.67 | 0.951608 |
Target: 5'- cGGCGcgGccGCGCcCGgGGagGGGCGCg -3' miRNA: 3'- -CCGCaaCuuCGCGaGUgCCa-UCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 75876 | 0.67 | 0.95564 |
Target: 5'- cGGCGccgUGGGcGCGCgcaGCGGc-GACGCc -3' miRNA: 3'- -CCGCa--ACUU-CGCGag-UGCCauCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 75987 | 0.68 | 0.933066 |
Target: 5'- gGGCGcgGccGCcCUCGCGcUGGACGCc -3' miRNA: 3'- -CCGCaaCuuCGcGAGUGCcAUCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 76422 | 0.71 | 0.829344 |
Target: 5'- cGCGUgcaGAgcgccGGCGC-CAUGGcGGACGCg -3' miRNA: 3'- cCGCAa--CU-----UCGCGaGUGCCaUCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 76738 | 0.69 | 0.904344 |
Target: 5'- uGGCc--GAcGUGCUCGCGGacguGGCGCa -3' miRNA: 3'- -CCGcaaCUuCGCGAGUGCCau--CUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 77079 | 0.69 | 0.884191 |
Target: 5'- cGCGc-GAGGCGCUgGCGc-GGACGCu -3' miRNA: 3'- cCGCaaCUUCGCGAgUGCcaUCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 77253 | 0.74 | 0.654216 |
Target: 5'- gGGCucaaaagGgcGCGCUCGCGGgcGGCGUc -3' miRNA: 3'- -CCGcaa----CuuCGCGAGUGCCauCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 79587 | 0.67 | 0.959438 |
Target: 5'- aGCGgaaguAGCGCUUGUGGUugaGGGCGCa -3' miRNA: 3'- cCGCaacu-UCGCGAGUGCCA---UCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 80067 | 0.69 | 0.910581 |
Target: 5'- gGGCGcggGggGCGUgggggaCGCGGaccGGCGCg -3' miRNA: 3'- -CCGCaa-CuuCGCGa-----GUGCCau-CUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 80303 | 1.15 | 0.002337 |
Target: 5'- uGGCGUUGAAGCGCUCACGGUAGACGCg -3' miRNA: 3'- -CCGCAACUUCGCGAGUGCCAUCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 80649 | 0.74 | 0.643809 |
Target: 5'- cGGCGaguagcUGguGUGCUCGCGGUGcGCGCc -3' miRNA: 3'- -CCGCa-----ACuuCGCGAGUGCCAUcUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 81349 | 0.75 | 0.602166 |
Target: 5'- cGGCGggGcGGGgGCUUGCGGgGGGCGCc -3' miRNA: 3'- -CCGCaaC-UUCgCGAGUGCCaUCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 81431 | 0.66 | 0.966349 |
Target: 5'- cGGCGUcGucGGcCGCccCGCGGcGGGCGCc -3' miRNA: 3'- -CCGCAaCu-UC-GCGa-GUGCCaUCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 82161 | 0.7 | 0.861959 |
Target: 5'- cGCGccaGcAAGCGCggCGCGGaAGGCGCg -3' miRNA: 3'- cCGCaa-C-UUCGCGa-GUGCCaUCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 82870 | 0.79 | 0.406447 |
Target: 5'- aGGCGgcGAcGGCGCUgGCGGUGGccucgccGCGCg -3' miRNA: 3'- -CCGCaaCU-UCGCGAgUGCCAUC-------UGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 82962 | 0.66 | 0.966349 |
Target: 5'- gGGCGgaagacgUGguGCGCgucgagCACGG-AGGCGg -3' miRNA: 3'- -CCGCa------ACuuCGCGa-----GUGCCaUCUGCg -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 83657 | 0.75 | 0.591793 |
Target: 5'- cGGCG-UGAGGCGgaCGCGcGccUGGGCGCg -3' miRNA: 3'- -CCGCaACUUCGCgaGUGC-C--AUCUGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 83751 | 0.68 | 0.922318 |
Target: 5'- aGGUGgcGgcGCGC-CACGGccgGGuCGCa -3' miRNA: 3'- -CCGCaaCuuCGCGaGUGCCa--UCuGCG- -5' |
|||||||
23617 | 5' | -52.9 | NC_005261.1 | + | 85311 | 0.71 | 0.811891 |
Target: 5'- -cCGUUGggGaagaGCUUGCGGUGGAacUGCu -3' miRNA: 3'- ccGCAACuuCg---CGAGUGCCAUCU--GCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home