miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 121124 0.68 0.927816
Target:  5'- gGGCGcgGAGGCGCgggCGCGa---GCGCg -3'
miRNA:   3'- -CCGCaaCUUCGCGa--GUGCcaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 121028 0.75 0.612562
Target:  5'- uGGCGcgggaGAAGCGCcgccacacgUCGCGGUuguGGCGCg -3'
miRNA:   3'- -CCGCaa---CUUCGCG---------AGUGCCAu--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 120941 0.67 0.951608
Target:  5'- gGGCGcgggaaggUGGAG-GCUCGCGccccgcgGGGCGCg -3'
miRNA:   3'- -CCGCa-------ACUUCgCGAGUGCca-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 118910 0.66 0.966349
Target:  5'- uGCGUcUGGguccGGCGC-CGCGGgcgcGGCGCc -3'
miRNA:   3'- cCGCA-ACU----UCGCGaGUGCCau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 118637 0.66 0.977597
Target:  5'- cGCGgc--GGCGCUCugGGccccgGGcCGCg -3'
miRNA:   3'- cCGCaacuUCGCGAGugCCa----UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 118371 0.75 0.602166
Target:  5'- gGGCGcUGggGCGC--GCGGcccgAGGCGCu -3'
miRNA:   3'- -CCGCaACuuCGCGagUGCCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 116011 0.67 0.951608
Target:  5'- aGGCGgccUGAgccgccgacGGCGCgCAUGGUcuGCGCc -3'
miRNA:   3'- -CCGCa--ACU---------UCGCGaGUGCCAucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 110533 0.66 0.969473
Target:  5'- gGGCGcagGAgGGCGCgcgCACGGaccAGGcCGCa -3'
miRNA:   3'- -CCGCaa-CU-UCGCGa--GUGCCa--UCU-GCG- -5'
23617 5' -52.9 NC_005261.1 + 110455 0.67 0.951608
Target:  5'- gGGCGUUuGGGUGC-CugGGcGGGCuGCu -3'
miRNA:   3'- -CCGCAAcUUCGCGaGugCCaUCUG-CG- -5'
23617 5' -52.9 NC_005261.1 + 109201 0.73 0.736051
Target:  5'- gGGCGUgcgcAGGCGCUC---GUAGGCGCg -3'
miRNA:   3'- -CCGCAac--UUCGCGAGugcCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 107682 0.71 0.829344
Target:  5'- gGGCGUUGc--CGC-CGCGGcggGGGCGCc -3'
miRNA:   3'- -CCGCAACuucGCGaGUGCCa--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 107257 0.67 0.947337
Target:  5'- cGCG--GgcGCGCgggCACGGgcGGGCGCg -3'
miRNA:   3'- cCGCaaCuuCGCGa--GUGCCa-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 106647 0.66 0.969473
Target:  5'- cGGCGacGucGCGCUCGCc---GGCGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGAGUGccauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 105667 0.66 0.977597
Target:  5'- cGGCGcgGAAGaCGCcCACGcccauGGCGCc -3'
miRNA:   3'- -CCGCaaCUUC-GCGaGUGCcau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 104992 0.66 0.969473
Target:  5'- cGGCGccc-AGCGCgggCgGCGGUcgGGGCGCc -3'
miRNA:   3'- -CCGCaacuUCGCGa--G-UGCCA--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 104204 0.77 0.481148
Target:  5'- cGGCGUccAGGCGCUCGCGcgcGGCGCg -3'
miRNA:   3'- -CCGCAacUUCGCGAGUGCcauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 103967 0.69 0.882772
Target:  5'- cGGCGgccgccacacgGAAGCGCUCgccgccgccGCGGUcggccaguauGGCGCg -3'
miRNA:   3'- -CCGCaa---------CUUCGCGAG---------UGCCAu---------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 103872 0.75 0.612562
Target:  5'- cGGCGggGcGGCGC-CGcCGGgcGGCGCg -3'
miRNA:   3'- -CCGCaaCuUCGCGaGU-GCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 102742 0.71 0.837796
Target:  5'- gGGCGUUcuucaGGGCGCUUGCcGcGGACGCg -3'
miRNA:   3'- -CCGCAAc----UUCGCGAGUGcCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 101699 0.69 0.910581
Target:  5'- gGGCGUggucGAAGCGCUCcagcuGCGccAG-CGCg -3'
miRNA:   3'- -CCGCAa---CUUCGCGAG-----UGCcaUCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.