miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 100950 0.67 0.947337
Target:  5'- cGCGUccacGGCGCgCGCGGUcucguggaAGGCGCc -3'
miRNA:   3'- cCGCAacu-UCGCGaGUGCCA--------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 98669 0.67 0.963005
Target:  5'- aGGCGagGgcGgGCUCcgcCGGggccggAGGCGCg -3'
miRNA:   3'- -CCGCaaCuuCgCGAGu--GCCa-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 98514 0.67 0.959438
Target:  5'- cGGCGUacggGcAGGCGCgagauccggC-CGGUAGGCuGCg -3'
miRNA:   3'- -CCGCAa---C-UUCGCGa--------GuGCCAUCUG-CG- -5'
23617 5' -52.9 NC_005261.1 + 98394 0.7 0.869592
Target:  5'- cGGCGUgGggGCGggCGCGGacucUGGugGg -3'
miRNA:   3'- -CCGCAaCuuCGCgaGUGCC----AUCugCg -5'
23617 5' -52.9 NC_005261.1 + 98357 0.68 0.942825
Target:  5'- gGGCGggGGugGGCGCgggCucUGGcGGGCGCa -3'
miRNA:   3'- -CCGCaaCU--UCGCGa--Gu-GCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 98004 0.8 0.356836
Target:  5'- aGGCGgcgGggGCGCUgGCGGcgaggcuggAGACGCc -3'
miRNA:   3'- -CCGCaa-CuuCGCGAgUGCCa--------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 97198 0.72 0.765459
Target:  5'- cGCGgccgGAAGCGC-CGCGGccacgcucggAGGCGCu -3'
miRNA:   3'- cCGCaa--CUUCGCGaGUGCCa---------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 97120 0.72 0.793762
Target:  5'- cGCGgccgGAGGCGC-CGCGGccacgcucggAGGCGCu -3'
miRNA:   3'- cCGCaa--CUUCGCGaGUGCCa---------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 97079 0.73 0.715961
Target:  5'- cGCGUcgGAGGCGCcggCugGGccggGGGCGCc -3'
miRNA:   3'- cCGCAa-CUUCGCGa--GugCCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 95807 0.71 0.829344
Target:  5'- cGGCGccGGcgGGgGCUCGCGGUccucgcGGCGCu -3'
miRNA:   3'- -CCGCaaCU--UCgCGAGUGCCAu-----CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 94308 0.69 0.889084
Target:  5'- cGGCGacccaggGggGCGC-CAgcccgaacucgcgcCGGUAGGCGUc -3'
miRNA:   3'- -CCGCaa-----CuuCGCGaGU--------------GCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 93494 0.66 0.972384
Target:  5'- cGCGgcGAAGCGCgcgaacCGCGGcgccguguUGGcCGCg -3'
miRNA:   3'- cCGCaaCUUCGCGa-----GUGCC--------AUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 92302 0.67 0.959438
Target:  5'- aGGCcagGAugAGCGCcgCGCGGUccGCGCg -3'
miRNA:   3'- -CCGcaaCU--UCGCGa-GUGCCAucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 91734 0.73 0.736051
Target:  5'- cGGCGggcuucgcGGCGCUCACGccGgcGGCGCa -3'
miRNA:   3'- -CCGCaacu----UCGCGAGUGC--CauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 91411 0.75 0.633391
Target:  5'- cGGCGaggacgUGGAGCGCgacgccgcCGCGGUGaACGCg -3'
miRNA:   3'- -CCGCa-----ACUUCGCGa-------GUGCCAUcUGCG- -5'
23617 5' -52.9 NC_005261.1 + 90397 0.66 0.97509
Target:  5'- cGGCGggGcuGGCGCccggCGCGGacuACGCg -3'
miRNA:   3'- -CCGCaaCu-UCGCGa---GUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 90211 0.77 0.481148
Target:  5'- gGGCGgcGGAGCGCccucgCGCGGcgggcGGGCGCg -3'
miRNA:   3'- -CCGCaaCUUCGCGa----GUGCCa----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 90172 0.68 0.916573
Target:  5'- aGGCGgagGggGgGgaCGgGGaGGACGCa -3'
miRNA:   3'- -CCGCaa-CuuCgCgaGUgCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 89561 0.71 0.811891
Target:  5'- gGGCGUaccucuUGGAGaaGCUCACGGccgucuacGACGCg -3'
miRNA:   3'- -CCGCA------ACUUCg-CGAGUGCCau------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 89178 0.7 0.852515
Target:  5'- cGCGgacaaccUGGAGcCGCUCGCGGgcgccgaggccGACGCg -3'
miRNA:   3'- cCGCa------ACUUC-GCGAGUGCCau---------CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.