miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 88733 0.67 0.947337
Target:  5'- cGCGaUGAGG-GC-CAgcUGGUGGACGCc -3'
miRNA:   3'- cCGCaACUUCgCGaGU--GCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 88601 0.7 0.861959
Target:  5'- cGGCccgGcGGCGC-CACGGUcguGACGCu -3'
miRNA:   3'- -CCGcaaCuUCGCGaGUGCCAu--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 87879 0.68 0.922318
Target:  5'- uGGCGgagaGAGGCGCggagaggGCGGgccGGGCGUa -3'
miRNA:   3'- -CCGCaa--CUUCGCGag-----UGCCa--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 87489 0.67 0.95564
Target:  5'- cGGCGcgGccGUGCUgGCGcGcAGGCGCu -3'
miRNA:   3'- -CCGCaaCuuCGCGAgUGC-CaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 87171 0.71 0.820706
Target:  5'- cGCGUUGAAGgGCUCcauguucacGCGGUucACGUc -3'
miRNA:   3'- cCGCAACUUCgCGAG---------UGCCAucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 87116 0.7 0.861959
Target:  5'- cGGCGUUguaGAAGgGC-CGCGGgu-ACGCg -3'
miRNA:   3'- -CCGCAA---CUUCgCGaGUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 86374 0.68 0.922318
Target:  5'- cGCGUcGcAGCGCUC-CaGGUAGAagaGCa -3'
miRNA:   3'- cCGCAaCuUCGCGAGuG-CCAUCUg--CG- -5'
23617 5' -52.9 NC_005261.1 + 86114 0.71 0.811891
Target:  5'- gGGCGUcGGAGCGC--GCuGUAcGACGCg -3'
miRNA:   3'- -CCGCAaCUUCGCGagUGcCAU-CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 85941 0.66 0.97509
Target:  5'- uGGCGgccaGGGCGC-CGCGGaagcuGGCGUg -3'
miRNA:   3'- -CCGCaac-UUCGCGaGUGCCau---CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 85311 0.71 0.811891
Target:  5'- -cCGUUGggGaagaGCUUGCGGUGGAacUGCu -3'
miRNA:   3'- ccGCAACuuCg---CGAGUGCCAUCU--GCG- -5'
23617 5' -52.9 NC_005261.1 + 83751 0.68 0.922318
Target:  5'- aGGUGgcGgcGCGC-CACGGccgGGuCGCa -3'
miRNA:   3'- -CCGCaaCuuCGCGaGUGCCa--UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 83657 0.75 0.591793
Target:  5'- cGGCG-UGAGGCGgaCGCGcGccUGGGCGCg -3'
miRNA:   3'- -CCGCaACUUCGCgaGUGC-C--AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 82962 0.66 0.966349
Target:  5'- gGGCGgaagacgUGguGCGCgucgagCACGG-AGGCGg -3'
miRNA:   3'- -CCGCa------ACuuCGCGa-----GUGCCaUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 82870 0.79 0.406447
Target:  5'- aGGCGgcGAcGGCGCUgGCGGUGGccucgccGCGCg -3'
miRNA:   3'- -CCGCaaCU-UCGCGAgUGCCAUC-------UGCG- -5'
23617 5' -52.9 NC_005261.1 + 82161 0.7 0.861959
Target:  5'- cGCGccaGcAAGCGCggCGCGGaAGGCGCg -3'
miRNA:   3'- cCGCaa-C-UUCGCGa-GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 81431 0.66 0.966349
Target:  5'- cGGCGUcGucGGcCGCccCGCGGcGGGCGCc -3'
miRNA:   3'- -CCGCAaCu-UC-GCGa-GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 81349 0.75 0.602166
Target:  5'- cGGCGggGcGGGgGCUUGCGGgGGGCGCc -3'
miRNA:   3'- -CCGCaaC-UUCgCGAGUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 80649 0.74 0.643809
Target:  5'- cGGCGaguagcUGguGUGCUCGCGGUGcGCGCc -3'
miRNA:   3'- -CCGCa-----ACuuCGCGAGUGCCAUcUGCG- -5'
23617 5' -52.9 NC_005261.1 + 80303 1.15 0.002337
Target:  5'- uGGCGUUGAAGCGCUCACGGUAGACGCg -3'
miRNA:   3'- -CCGCAACUUCGCGAGUGCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 80067 0.69 0.910581
Target:  5'- gGGCGcggGggGCGUgggggaCGCGGaccGGCGCg -3'
miRNA:   3'- -CCGCaa-CuuCGCGa-----GUGCCau-CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.