miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 79587 0.67 0.959438
Target:  5'- aGCGgaaguAGCGCUUGUGGUugaGGGCGCa -3'
miRNA:   3'- cCGCaacu-UCGCGAGUGCCA---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 77253 0.74 0.654216
Target:  5'- gGGCucaaaagGgcGCGCUCGCGGgcGGCGUc -3'
miRNA:   3'- -CCGcaa----CuuCGCGAGUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 77079 0.69 0.884191
Target:  5'- cGCGc-GAGGCGCUgGCGc-GGACGCu -3'
miRNA:   3'- cCGCaaCUUCGCGAgUGCcaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 76738 0.69 0.904344
Target:  5'- uGGCc--GAcGUGCUCGCGGacguGGCGCa -3'
miRNA:   3'- -CCGcaaCUuCGCGAGUGCCau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 76422 0.71 0.829344
Target:  5'- cGCGUgcaGAgcgccGGCGC-CAUGGcGGACGCg -3'
miRNA:   3'- cCGCAa--CU-----UCGCGaGUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 75987 0.68 0.933066
Target:  5'- gGGCGcgGccGCcCUCGCGcUGGACGCc -3'
miRNA:   3'- -CCGCaaCuuCGcGAGUGCcAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 75876 0.67 0.95564
Target:  5'- cGGCGccgUGGGcGCGCgcaGCGGc-GACGCc -3'
miRNA:   3'- -CCGCa--ACUU-CGCGag-UGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 75826 0.67 0.951608
Target:  5'- cGGCGcgGccGCGCcCGgGGagGGGCGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGaGUgCCa-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 75583 0.76 0.550677
Target:  5'- cGGCGgcGcGGCGCUCGCGcGcgccgcGGACGCg -3'
miRNA:   3'- -CCGCaaCuUCGCGAGUGC-Ca-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 75507 0.69 0.891146
Target:  5'- gGGCGcugGAGGCGCaCGCcGUGGuCGCc -3'
miRNA:   3'- -CCGCaa-CUUCGCGaGUGcCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 74865 0.7 0.877005
Target:  5'- gGGCGgagGAGGCGgaCGCGGc-GGCGg -3'
miRNA:   3'- -CCGCaa-CUUCGCgaGUGCCauCUGCg -5'
23617 5' -52.9 NC_005261.1 + 74818 0.68 0.927816
Target:  5'- uGGCGgaggUGGccgccGUGCUCGCGGaccuggGGAgGCg -3'
miRNA:   3'- -CCGCa---ACUu----CGCGAGUGCCa-----UCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 74755 0.67 0.95564
Target:  5'- uGGCGcgGcAGCGCgccacaggCGCGGaggucGACGCg -3'
miRNA:   3'- -CCGCaaCuUCGCGa-------GUGCCau---CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 74480 0.69 0.884191
Target:  5'- cGGCGUgccUGGgcgggaucucGGCGCUCuuCGGggcGGCGCc -3'
miRNA:   3'- -CCGCA---ACU----------UCGCGAGu-GCCau-CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 74284 0.7 0.877005
Target:  5'- cGGCGggcGggGCGgUCGCcgccGGgcagcAGACGCg -3'
miRNA:   3'- -CCGCaa-CuuCGCgAGUG----CCa----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 73213 0.66 0.969473
Target:  5'- gGGCGccucGAGGgGC--GCGGUGGcCGCg -3'
miRNA:   3'- -CCGCaa--CUUCgCGagUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 72446 0.7 0.861959
Target:  5'- cGGCG--GggGCGCcCGCGGcgAG-CGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGaGUGCCa-UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 71964 0.7 0.877005
Target:  5'- cGGCGc-GggGCGCggagcgCGCGGcAGguGCGCa -3'
miRNA:   3'- -CCGCaaCuuCGCGa-----GUGCCaUC--UGCG- -5'
23617 5' -52.9 NC_005261.1 + 71179 0.69 0.891146
Target:  5'- cGCGUccgGgcGCaGCUCGCGG--GGCGCg -3'
miRNA:   3'- cCGCAa--CuuCG-CGAGUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 70974 0.66 0.969473
Target:  5'- cGGCGaaGAagAGCGCguggcgCGCGGgcGGcCGCc -3'
miRNA:   3'- -CCGCaaCU--UCGCGa-----GUGCCauCU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.