miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 121673 0.66 0.976617
Target:  5'- cGGCGUaggUGuAGGCGCccuccagguugcgCAUGGaggcgUAGACGCc -3'
miRNA:   3'- -CCGCA---AC-UUCGCGa------------GUGCC-----AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 59618 0.66 0.977355
Target:  5'- cGGCGgauGAGCGCcaggaccUCGCGGUcgcuguccucgAGGCGg -3'
miRNA:   3'- -CCGCaacUUCGCG-------AGUGCCA-----------UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 48034 0.66 0.977597
Target:  5'- gGGCGagGAGcacGCGCgCGCGGUcgGGGCccGCg -3'
miRNA:   3'- -CCGCaaCUU---CGCGaGUGCCA--UCUG--CG- -5'
23617 5' -52.9 NC_005261.1 + 118637 0.66 0.977597
Target:  5'- cGCGgc--GGCGCUCugGGccccgGGcCGCg -3'
miRNA:   3'- cCGCaacuUCGCGAGugCCa----UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 49261 0.66 0.977597
Target:  5'- cGGCGUcGgcGCGCacgucCGCGaGgaAGGCGCa -3'
miRNA:   3'- -CCGCAaCuuCGCGa----GUGC-Ca-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 69232 0.66 0.972384
Target:  5'- cGCGcUGggGCgGUUCGCcg-AGGCGCu -3'
miRNA:   3'- cCGCaACuuCG-CGAGUGccaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 46273 0.66 0.972384
Target:  5'- cGUGUccccGggGCGCUCuggcCGGgcaacGGCGCg -3'
miRNA:   3'- cCGCAa---CuuCGCGAGu---GCCau---CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 31453 0.66 0.969473
Target:  5'- cGGCGagGAcgAGCGCcgGCGGccugAGugGCc -3'
miRNA:   3'- -CCGCaaCU--UCGCGagUGCCa---UCugCG- -5'
23617 5' -52.9 NC_005261.1 + 68240 0.66 0.969473
Target:  5'- cGGCGggGgcGUGUUCGUGGacugccuGGCGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGAGUGCCau-----CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 69537 0.66 0.969473
Target:  5'- gGGCGcUGgcGCGCgcgCugGGgacGGCGg -3'
miRNA:   3'- -CCGCaACuuCGCGa--GugCCau-CUGCg -5'
23617 5' -52.9 NC_005261.1 + 70974 0.66 0.969473
Target:  5'- cGGCGaaGAagAGCGCguggcgCGCGGgcGGcCGCc -3'
miRNA:   3'- -CCGCaaCU--UCGCGa-----GUGCCauCU-GCG- -5'
23617 5' -52.9 NC_005261.1 + 106647 0.66 0.969473
Target:  5'- cGGCGacGucGCGCUCGCc---GGCGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGAGUGccauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 35431 0.66 0.969473
Target:  5'- cGGCa--GAAGCGCccgcccgcccCGCGGgucUAGGCGCg -3'
miRNA:   3'- -CCGcaaCUUCGCGa---------GUGCC---AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 104992 0.66 0.969473
Target:  5'- cGGCGccc-AGCGCgggCgGCGGUcgGGGCGCc -3'
miRNA:   3'- -CCGCaacuUCGCGa--G-UGCCA--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 133128 0.66 0.969473
Target:  5'- cGGCGUgc--GCGuCUCccuGCGGUGcGCGCu -3'
miRNA:   3'- -CCGCAacuuCGC-GAG---UGCCAUcUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43270 0.66 0.969773
Target:  5'- uGCGUUcGggGCGUcgcggccgccuuuccCGCGGgGGGCGCc -3'
miRNA:   3'- cCGCAA-CuuCGCGa--------------GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 3413 0.66 0.970662
Target:  5'- cGGCGggcUGAAGaGCgCGCGGgccagcguccaggcGGGCGCg -3'
miRNA:   3'- -CCGCa--ACUUCgCGaGUGCCa-------------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 48985 0.66 0.972384
Target:  5'- aGGCGU---AGUGC---CGGUAGAUGCc -3'
miRNA:   3'- -CCGCAacuUCGCGaguGCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 3656 0.66 0.972384
Target:  5'- cGCGUcUGGAGCGCaggcCGCGGccggcAGGcCGCg -3'
miRNA:   3'- cCGCA-ACUUCGCGa---GUGCCa----UCU-GCG- -5'
23617 5' -52.9 NC_005261.1 + 28617 0.66 0.972384
Target:  5'- uGGCGgagcUGuGGCGC--AUGGUGGcCGCg -3'
miRNA:   3'- -CCGCa---ACuUCGCGagUGCCAUCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.