miRNA display CGI


Results 1 - 20 of 417 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 121023 0.66 0.681979
Target:  5'- cCCGCuGGcGCGGGagaaGCgCCGCCaCACGUcGCg -3'
miRNA:   3'- -GGCG-CU-CGCCC----UG-GGCGGcGUGCA-UG- -5'
23619 3' -61.9 NC_005261.1 + 12204 0.66 0.681979
Target:  5'- gCCGCc-GCcGGugCCGCCGC-CGcUGCu -3'
miRNA:   3'- -GGCGcuCGcCCugGGCGGCGuGC-AUG- -5'
23619 3' -61.9 NC_005261.1 + 31004 0.66 0.681979
Target:  5'- gCCG-GGGCcaGGGGCCCGgCGC-CGgcCa -3'
miRNA:   3'- -GGCgCUCG--CCCUGGGCgGCGuGCauG- -5'
23619 3' -61.9 NC_005261.1 + 55796 0.66 0.681979
Target:  5'- gUCGCGGcGCGcGGCCuuCGCCGC-CGUAa -3'
miRNA:   3'- -GGCGCU-CGCcCUGG--GCGGCGuGCAUg -5'
23619 3' -61.9 NC_005261.1 + 67067 0.66 0.681979
Target:  5'- gCGCGcGCgGGGGCUCGCuCGgGCGg-- -3'
miRNA:   3'- gGCGCuCG-CCCUGGGCG-GCgUGCaug -5'
23619 3' -61.9 NC_005261.1 + 87140 0.66 0.681979
Target:  5'- aCGCGAGCuGcucgccgauGGCCCGCuggCGCGCGUu- -3'
miRNA:   3'- gGCGCUCGcC---------CUGGGCG---GCGUGCAug -5'
23619 3' -61.9 NC_005261.1 + 88338 0.66 0.681979
Target:  5'- -gGCuGGCGGcGcCCCGCCGC-CGcgGCg -3'
miRNA:   3'- ggCGcUCGCC-CuGGGCGGCGuGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 12029 0.66 0.681979
Target:  5'- cCCGCGAcGCGcucgaGCCCcaGCCggaGCACGUACc -3'
miRNA:   3'- -GGCGCU-CGCcc---UGGG--CGG---CGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 54835 0.66 0.681979
Target:  5'- aCGCGGGCaGGGCUagcugccggCGCCGCAgGc-- -3'
miRNA:   3'- gGCGCUCGcCCUGG---------GCGGCGUgCaug -5'
23619 3' -61.9 NC_005261.1 + 64054 0.66 0.681979
Target:  5'- gCCGCGugguGCGccACCggcUGCCGCACGgugGCg -3'
miRNA:   3'- -GGCGCu---CGCccUGG---GCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 68686 0.66 0.681979
Target:  5'- gCCGCGuG-GGGGCCgGCgCGgACG-ACg -3'
miRNA:   3'- -GGCGCuCgCCCUGGgCG-GCgUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 130103 0.66 0.681979
Target:  5'- uCCGCGccAGCgacugcgccuuGGcGAgCCGCCGCGCGc-- -3'
miRNA:   3'- -GGCGC--UCG-----------CC-CUgGGCGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 85407 0.66 0.681979
Target:  5'- cCCGCGAGCccGAgCaCGCgCGCGCGcGCc -3'
miRNA:   3'- -GGCGCUCGccCUgG-GCG-GCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 119535 0.66 0.681979
Target:  5'- cCCGCggccGAGCaaGGcCCCGCCGCGgGgccGCa -3'
miRNA:   3'- -GGCG----CUCGc-CCuGGGCGGCGUgCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 68832 0.66 0.676161
Target:  5'- gCCGUGGcggcccccccgucccGCGGGgacGCCCucuGCCGCGgcUGUGCg -3'
miRNA:   3'- -GGCGCU---------------CGCCC---UGGG---CGGCGU--GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 35098 0.66 0.672275
Target:  5'- gCCGCgguGAGCGGcGAgcccCCCaGCCGC-CGgcgGCg -3'
miRNA:   3'- -GGCG---CUCGCC-CU----GGG-CGGCGuGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 16684 0.66 0.672275
Target:  5'- uCCGUGua-GGcGACCgCGCCGUcgAUGUACa -3'
miRNA:   3'- -GGCGCucgCC-CUGG-GCGGCG--UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 2747 0.66 0.672275
Target:  5'- gCCGCG-GCGGG--CCGUCGCgGCGgGCc -3'
miRNA:   3'- -GGCGCuCGCCCugGGCGGCG-UGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 138003 0.66 0.672275
Target:  5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3'
miRNA:   3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5'
23619 3' -61.9 NC_005261.1 + 3555 0.66 0.672275
Target:  5'- gCgGCGGGCGcGGCgCCGCUaagGCGCGcGCg -3'
miRNA:   3'- -GgCGCUCGCcCUG-GGCGG---CGUGCaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.