Results 21 - 40 of 417 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 3555 | 0.66 | 0.672275 |
Target: 5'- gCgGCGGGCGcGGCgCCGCUaagGCGCGcGCg -3' miRNA: 3'- -GgCGCUCGCcCUG-GGCGG---CGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 138003 | 0.66 | 0.672275 |
Target: 5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3' miRNA: 3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 88338 | 0.66 | 0.681979 |
Target: 5'- -gGCuGGCGGcGcCCCGCCGC-CGcgGCg -3' miRNA: 3'- ggCGcUCGCC-CuGGGCGGCGuGCa-UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 12029 | 0.66 | 0.681979 |
Target: 5'- cCCGCGAcGCGcucgaGCCCcaGCCggaGCACGUACc -3' miRNA: 3'- -GGCGCU-CGCcc---UGGG--CGG---CGUGCAUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 54835 | 0.66 | 0.681979 |
Target: 5'- aCGCGGGCaGGGCUagcugccggCGCCGCAgGc-- -3' miRNA: 3'- gGCGCUCGcCCUGG---------GCGGCGUgCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 64054 | 0.66 | 0.681979 |
Target: 5'- gCCGCGugguGCGccACCggcUGCCGCACGgugGCg -3' miRNA: 3'- -GGCGCu---CGCccUGG---GCGGCGUGCa--UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 68686 | 0.66 | 0.681979 |
Target: 5'- gCCGCGuG-GGGGCCgGCgCGgACG-ACg -3' miRNA: 3'- -GGCGCuCgCCCUGGgCG-GCgUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 130103 | 0.66 | 0.681979 |
Target: 5'- uCCGCGccAGCgacugcgccuuGGcGAgCCGCCGCGCGc-- -3' miRNA: 3'- -GGCGC--UCG-----------CC-CUgGGCGGCGUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 85407 | 0.66 | 0.681979 |
Target: 5'- cCCGCGAGCccGAgCaCGCgCGCGCGcGCc -3' miRNA: 3'- -GGCGCUCGccCUgG-GCG-GCGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 119535 | 0.66 | 0.681979 |
Target: 5'- cCCGCggccGAGCaaGGcCCCGCCGCGgGgccGCa -3' miRNA: 3'- -GGCG----CUCGc-CCuGGGCGGCGUgCa--UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 87140 | 0.66 | 0.681979 |
Target: 5'- aCGCGAGCuGcucgccgauGGCCCGCuggCGCGCGUu- -3' miRNA: 3'- gGCGCUCGcC---------CUGGGCG---GCGUGCAug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 67067 | 0.66 | 0.681979 |
Target: 5'- gCGCGcGCgGGGGCUCGCuCGgGCGg-- -3' miRNA: 3'- gGCGCuCG-CCCUGGGCG-GCgUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 2747 | 0.66 | 0.672275 |
Target: 5'- gCCGCG-GCGGG--CCGUCGCgGCGgGCc -3' miRNA: 3'- -GGCGCuCGCCCugGGCGGCG-UGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 16684 | 0.66 | 0.672275 |
Target: 5'- uCCGUGua-GGcGACCgCGCCGUcgAUGUACa -3' miRNA: 3'- -GGCGCucgCC-CUGG-GCGGCG--UGCAUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 35098 | 0.66 | 0.672275 |
Target: 5'- gCCGCgguGAGCGGcGAgcccCCCaGCCGC-CGgcgGCg -3' miRNA: 3'- -GGCG---CUCGCC-CU----GGG-CGGCGuGCa--UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 104790 | 0.66 | 0.672275 |
Target: 5'- gCCGCGAucgcgugcuccaGCGGGuCCCGCUcCGCa--- -3' miRNA: 3'- -GGCGCU------------CGCCCuGGGCGGcGUGcaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 68832 | 0.66 | 0.676161 |
Target: 5'- gCCGUGGcggcccccccgucccGCGGGgacGCCCucuGCCGCGgcUGUGCg -3' miRNA: 3'- -GGCGCU---------------CGCCC---UGGG---CGGCGU--GCAUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 12204 | 0.66 | 0.681979 |
Target: 5'- gCCGCc-GCcGGugCCGCCGC-CGcUGCu -3' miRNA: 3'- -GGCGcuCGcCCugGGCGGCGuGC-AUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 31004 | 0.66 | 0.681979 |
Target: 5'- gCCG-GGGCcaGGGGCCCGgCGC-CGgcCa -3' miRNA: 3'- -GGCgCUCG--CCCUGGGCgGCGuGCauG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 55796 | 0.66 | 0.681979 |
Target: 5'- gUCGCGGcGCGcGGCCuuCGCCGC-CGUAa -3' miRNA: 3'- -GGCGCU-CGCcCUGG--GCGGCGuGCAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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