miRNA display CGI


Results 41 - 60 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 64054 0.66 0.681979
Target:  5'- gCCGCGugguGCGccACCggcUGCCGCACGgugGCg -3'
miRNA:   3'- -GGCGCu---CGCccUGG---GCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 68686 0.66 0.681979
Target:  5'- gCCGCGuG-GGGGCCgGCgCGgACG-ACg -3'
miRNA:   3'- -GGCGCuCgCCCUGGgCG-GCgUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 130103 0.66 0.681979
Target:  5'- uCCGCGccAGCgacugcgccuuGGcGAgCCGCCGCGCGc-- -3'
miRNA:   3'- -GGCGC--UCG-----------CC-CUgGGCGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 85407 0.66 0.681979
Target:  5'- cCCGCGAGCccGAgCaCGCgCGCGCGcGCc -3'
miRNA:   3'- -GGCGCUCGccCUgG-GCG-GCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 119535 0.66 0.681979
Target:  5'- cCCGCggccGAGCaaGGcCCCGCCGCGgGgccGCa -3'
miRNA:   3'- -GGCG----CUCGc-CCuGGGCGGCGUgCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 68832 0.66 0.676161
Target:  5'- gCCGUGGcggcccccccgucccGCGGGgacGCCCucuGCCGCGgcUGUGCg -3'
miRNA:   3'- -GGCGCU---------------CGCCC---UGGG---CGGCGU--GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 104790 0.66 0.672275
Target:  5'- gCCGCGAucgcgugcuccaGCGGGuCCCGCUcCGCa--- -3'
miRNA:   3'- -GGCGCU------------CGCCCuGGGCGGcGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 62807 0.66 0.662541
Target:  5'- --uCGGGCuGGGCCauauCGCCGCGCGggGCa -3'
miRNA:   3'- ggcGCUCGcCCUGG----GCGGCGUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 27467 0.66 0.662541
Target:  5'- cCCGCgGGGCGGGcagGCCCuccCCGgGCGcACc -3'
miRNA:   3'- -GGCG-CUCGCCC---UGGGc--GGCgUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 76932 0.66 0.662541
Target:  5'- gCCGCGu-CGGGACCa-UCGuUACGUACg -3'
miRNA:   3'- -GGCGCucGCCCUGGgcGGC-GUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 67431 0.66 0.662541
Target:  5'- cCCGCG-GCcagcgcccaaaGGGcagccgguccGCCCGCaCGCccGCGUACa -3'
miRNA:   3'- -GGCGCuCG-----------CCC----------UGGGCG-GCG--UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 107904 0.66 0.662541
Target:  5'- uCCGCGGccGCGGccucGGCCacgaguGCCGCGCGg-- -3'
miRNA:   3'- -GGCGCU--CGCC----CUGGg-----CGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 92729 0.66 0.669358
Target:  5'- gCGgGAGCGGGGCggggacagcgagcgCCGCcCGCGCc--- -3'
miRNA:   3'- gGCgCUCGCCCUG--------------GGCG-GCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 27504 0.66 0.671303
Target:  5'- aCCGCcaggucuGGGCGGGccagcuggGCCCGCCcucGCACcuagGCg -3'
miRNA:   3'- -GGCG-------CUCGCCC--------UGGGCGG---CGUGca--UG- -5'
23619 3' -61.9 NC_005261.1 + 332 0.66 0.672275
Target:  5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3'
miRNA:   3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5'
23619 3' -61.9 NC_005261.1 + 3555 0.66 0.672275
Target:  5'- gCgGCGGGCGcGGCgCCGCUaagGCGCGcGCg -3'
miRNA:   3'- -GgCGCUCGCcCUG-GGCGG---CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 138003 0.66 0.672275
Target:  5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3'
miRNA:   3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5'
23619 3' -61.9 NC_005261.1 + 2747 0.66 0.672275
Target:  5'- gCCGCG-GCGGG--CCGUCGCgGCGgGCc -3'
miRNA:   3'- -GGCGCuCGCCCugGGCGGCG-UGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 16684 0.66 0.672275
Target:  5'- uCCGUGua-GGcGACCgCGCCGUcgAUGUACa -3'
miRNA:   3'- -GGCGCucgCC-CUGG-GCGGCG--UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 35098 0.66 0.672275
Target:  5'- gCCGCgguGAGCGGcGAgcccCCCaGCCGC-CGgcgGCg -3'
miRNA:   3'- -GGCG---CUCGCC-CU----GGG-CGGCGuGCa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.