miRNA display CGI


Results 61 - 80 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 77270 0.66 0.656689
Target:  5'- cUCGCGGGCGGcGucugcauugcgcuuCCCGUCGCgaGCGgACg -3'
miRNA:   3'- -GGCGCUCGCC-Cu-------------GGGCGGCG--UGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 117908 0.66 0.656689
Target:  5'- -gGUGAGCGGcugcgcgggaacgaaGGCCgGCUGCGgccCGUGCg -3'
miRNA:   3'- ggCGCUCGCC---------------CUGGgCGGCGU---GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 127837 0.66 0.661566
Target:  5'- gCCGCGAGCagcggacGGGGCggUCGCgGCGCcaggGCa -3'
miRNA:   3'- -GGCGCUCG-------CCCUG--GGCGgCGUGca--UG- -5'
23619 3' -61.9 NC_005261.1 + 50783 0.66 0.661566
Target:  5'- aCCGCGgcGGCGGccgccccGGCgCCGCCGcCAUG-ACg -3'
miRNA:   3'- -GGCGC--UCGCC-------CUG-GGCGGC-GUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 59702 0.66 0.661566
Target:  5'- aCGCGcucCGGGcagacccGCCCGCCGgGCGgcaGCg -3'
miRNA:   3'- gGCGCuc-GCCC-------UGGGCGGCgUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 62807 0.66 0.662541
Target:  5'- --uCGGGCuGGGCCauauCGCCGCGCGggGCa -3'
miRNA:   3'- ggcGCUCGcCCUGG----GCGGCGUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 27467 0.66 0.662541
Target:  5'- cCCGCgGGGCGGGcagGCCCuccCCGgGCGcACc -3'
miRNA:   3'- -GGCG-CUCGCCC---UGGGc--GGCgUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 3555 0.66 0.672275
Target:  5'- gCgGCGGGCGcGGCgCCGCUaagGCGCGcGCg -3'
miRNA:   3'- -GgCGCUCGCcCUG-GGCGG---CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 332 0.66 0.672275
Target:  5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3'
miRNA:   3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5'
23619 3' -61.9 NC_005261.1 + 27504 0.66 0.671303
Target:  5'- aCCGCcaggucuGGGCGGGccagcuggGCCCGCCcucGCACcuagGCg -3'
miRNA:   3'- -GGCG-------CUCGCCC--------UGGGCGG---CGUGca--UG- -5'
23619 3' -61.9 NC_005261.1 + 92729 0.66 0.669358
Target:  5'- gCGgGAGCGGGGCggggacagcgagcgCCGCcCGCGCc--- -3'
miRNA:   3'- gGCgCUCGCCCUG--------------GGCG-GCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 107904 0.66 0.662541
Target:  5'- uCCGCGGccGCGGccucGGCCacgaguGCCGCGCGg-- -3'
miRNA:   3'- -GGCGCU--CGCC----CUGGg-----CGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 67431 0.66 0.662541
Target:  5'- cCCGCG-GCcagcgcccaaaGGGcagccgguccGCCCGCaCGCccGCGUACa -3'
miRNA:   3'- -GGCGCuCG-----------CCC----------UGGGCG-GCG--UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 76932 0.66 0.662541
Target:  5'- gCCGCGu-CGGGACCa-UCGuUACGUACg -3'
miRNA:   3'- -GGCGCucGCCCUGGgcGGC-GUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 101954 0.67 0.622476
Target:  5'- -gGCGAGcCGGGGCaCgGCCGCcaggucgcccuccAgGUACg -3'
miRNA:   3'- ggCGCUC-GCCCUG-GgCGGCG-------------UgCAUG- -5'
23619 3' -61.9 NC_005261.1 + 38937 0.67 0.623454
Target:  5'- gCCGgcggcCGGGCGGG-CCgCGgCGCGCGgGCu -3'
miRNA:   3'- -GGC-----GCUCGCCCuGG-GCgGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 64500 0.67 0.623454
Target:  5'- gCGCGGGUgcucGGGGCCCG-CGgGCGg-- -3'
miRNA:   3'- gGCGCUCG----CCCUGGGCgGCgUGCaug -5'
23619 3' -61.9 NC_005261.1 + 93909 0.67 0.623454
Target:  5'- aCUGCGGGCGcGGcGCCCGCgggcuUGCGcCGUccGCg -3'
miRNA:   3'- -GGCGCUCGC-CC-UGGGCG-----GCGU-GCA--UG- -5'
23619 3' -61.9 NC_005261.1 + 99720 0.67 0.623454
Target:  5'- gUCGCGcGCGuGGCCgCGUCagGCGCGUGCc -3'
miRNA:   3'- -GGCGCuCGCcCUGG-GCGG--CGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 98488 0.67 0.621499
Target:  5'- uCCGCGGGCucgggcggguaaGGugCCGgCGUACGgGCa -3'
miRNA:   3'- -GGCGCUCGc-----------CCugGGCgGCGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.