miRNA display CGI


Results 81 - 100 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 67487 0.67 0.603919
Target:  5'- cCCGCGGcCGccGCCaGCCGCGCGUAg -3'
miRNA:   3'- -GGCGCUcGCccUGGgCGGCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 63656 0.67 0.607822
Target:  5'- uCCGCGuccccguucaccaugGGCGGG-UCC-CCGCGCGUc- -3'
miRNA:   3'- -GGCGC---------------UCGCCCuGGGcGGCGUGCAug -5'
23619 3' -61.9 NC_005261.1 + 58450 0.67 0.603919
Target:  5'- aCGCGuacGCGuacGACUCGCCggGCGCGUAUg -3'
miRNA:   3'- gGCGCu--CGCc--CUGGGCGG--CGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 37064 0.67 0.603919
Target:  5'- cCCGCGAGCGGuGAUag---GCACGUAUa -3'
miRNA:   3'- -GGCGCUCGCC-CUGggcggCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 129534 0.67 0.603919
Target:  5'- -gGCGcGCGGG-CUaCGCCGCAagGUGCa -3'
miRNA:   3'- ggCGCuCGCCCuGG-GCGGCGUg-CAUG- -5'
23619 3' -61.9 NC_005261.1 + 110624 0.67 0.603919
Target:  5'- gCUGCG-GCuGGAgCCCGCCG-GCGUAa -3'
miRNA:   3'- -GGCGCuCGcCCU-GGGCGGCgUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 44971 0.67 0.61368
Target:  5'- aCGCGcGCGaGGGCCCgggcggGCCGCcacAgGUGCu -3'
miRNA:   3'- gGCGCuCGC-CCUGGG------CGGCG---UgCAUG- -5'
23619 3' -61.9 NC_005261.1 + 62083 0.67 0.61368
Target:  5'- gCGCGAgGCGcuGCCCaGCUGCACGaugGCg -3'
miRNA:   3'- gGCGCU-CGCccUGGG-CGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 63023 0.67 0.61368
Target:  5'- gCGCGGGCGccGGcGCCCGCgGCGag-GCg -3'
miRNA:   3'- gGCGCUCGC--CC-UGGGCGgCGUgcaUG- -5'
23619 3' -61.9 NC_005261.1 + 99720 0.67 0.623454
Target:  5'- gUCGCGcGCGuGGCCgCGUCagGCGCGUGCc -3'
miRNA:   3'- -GGCGCuCGCcCUGG-GCGG--CGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 93909 0.67 0.623454
Target:  5'- aCUGCGGGCGcGGcGCCCGCgggcuUGCGcCGUccGCg -3'
miRNA:   3'- -GGCGCUCGC-CC-UGGGCG-----GCGU-GCA--UG- -5'
23619 3' -61.9 NC_005261.1 + 64500 0.67 0.623454
Target:  5'- gCGCGGGUgcucGGGGCCCG-CGgGCGg-- -3'
miRNA:   3'- gGCGCUCG----CCCUGGGCgGCgUGCaug -5'
23619 3' -61.9 NC_005261.1 + 38937 0.67 0.623454
Target:  5'- gCCGgcggcCGGGCGGG-CCgCGgCGCGCGgGCu -3'
miRNA:   3'- -GGC-----GCUCGCCCuGG-GCgGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 101954 0.67 0.622476
Target:  5'- -gGCGAGcCGGGGCaCgGCCGCcaggucgcccuccAgGUACg -3'
miRNA:   3'- ggCGCUC-GCCCUG-GgCGGCG-------------UgCAUG- -5'
23619 3' -61.9 NC_005261.1 + 98488 0.67 0.621499
Target:  5'- uCCGCGGGCucgggcggguaaGGugCCGgCGUACGgGCa -3'
miRNA:   3'- -GGCGCUCGc-----------CCugGGCgGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 53111 0.67 0.61368
Target:  5'- gCCGCG-GCGcuGCgCGCCGCcaacagggcgGCGUACg -3'
miRNA:   3'- -GGCGCuCGCccUGgGCGGCG----------UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 19239 0.67 0.61368
Target:  5'- cCCGCGAgacuGCGGGGgCgcugaacagCGCgCGCGgGUACg -3'
miRNA:   3'- -GGCGCU----CGCCCUgG---------GCG-GCGUgCAUG- -5'
23619 3' -61.9 NC_005261.1 + 104190 0.67 0.61368
Target:  5'- gUCGuCGGGCGGGACggcguccaggCGCuCGCGCGcgGCg -3'
miRNA:   3'- -GGC-GCUCGCCCUGg---------GCG-GCGUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 76030 0.67 0.61368
Target:  5'- gCCGCGGGCGc--CCCGCgCGCcaucaGCGUGg -3'
miRNA:   3'- -GGCGCUCGCccuGGGCG-GCG-----UGCAUg -5'
23619 3' -61.9 NC_005261.1 + 72986 0.67 0.61368
Target:  5'- uCCGCGAGCGcGGCCa---GCGCGUccGCg -3'
miRNA:   3'- -GGCGCUCGCcCUGGgcggCGUGCA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.