miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 79526 1.1 0.000706
Target:  5'- uCCGCGAGCGGGACCCGCCGCACGUACg -3'
miRNA:   3'- -GGCGCUCGCCCUGGGCGGCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 122632 0.83 0.066121
Target:  5'- aCgGCGAGCGcGaGGCCCGgCGCGCGUACg -3'
miRNA:   3'- -GgCGCUCGC-C-CUGGGCgGCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 44262 0.82 0.077105
Target:  5'- gCCGCGgcgcgcgggggGGCGGGGCCCGCCGCcaGCGgcggGCc -3'
miRNA:   3'- -GGCGC-----------UCGCCCUGGGCGGCG--UGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 49128 0.81 0.08114
Target:  5'- gCgGCGGGCGGGACCC-CCGCGCGc-- -3'
miRNA:   3'- -GgCGCUCGCCCUGGGcGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 31058 0.81 0.092129
Target:  5'- gCGCG-GCGGGAgCCGCCGCugcccgcccGCGUGCu -3'
miRNA:   3'- gGCGCuCGCCCUgGGCGGCG---------UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 57907 0.81 0.08114
Target:  5'- aCCGCGucGCGGaagacGGCCCGCaCGCGCGUGCu -3'
miRNA:   3'- -GGCGCu-CGCC-----CUGGGCG-GCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 33694 0.81 0.089823
Target:  5'- cCCGgGGucgcGCGGGGCCCGCUGCACGagggGCg -3'
miRNA:   3'- -GGCgCU----CGCCCUGGGCGGCGUGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 68298 0.8 0.099385
Target:  5'- gCCGCGGGCGcGGACCUcugcgGCCGCuucgACGUGCc -3'
miRNA:   3'- -GGCGCUCGC-CCUGGG-----CGGCG----UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 238 0.79 0.112689
Target:  5'- cCCGCGAGCGGGcCCgGCUGCgGCGgcgGCu -3'
miRNA:   3'- -GGCGCUCGCCCuGGgCGGCG-UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 137921 0.79 0.112689
Target:  5'- cCCGCGAGCGGGcCCgGCUGCgGCGgcgGCu -3'
miRNA:   3'- -GGCGCUCGCCCuGGgCGGCG-UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 37355 0.78 0.13748
Target:  5'- uCCGCGGGCGGuGCUCGCCGCcCGagGCg -3'
miRNA:   3'- -GGCGCUCGCCcUGGGCGGCGuGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 2215 0.78 0.137141
Target:  5'- gCCGCGAGCaGGugcgagaGCCCGCCGCGCa--- -3'
miRNA:   3'- -GGCGCUCGcCC-------UGGGCGGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 125821 0.78 0.13748
Target:  5'- gCCGCGAGCGGGGCCgGaCCGgGCuuUGCa -3'
miRNA:   3'- -GGCGCUCGCCCUGGgC-GGCgUGc-AUG- -5'
23619 3' -61.9 NC_005261.1 + 102797 0.77 0.171285
Target:  5'- gCCGCGAGCGcGGcGCCCaGCCGC-CGcGCg -3'
miRNA:   3'- -GGCGCUCGC-CC-UGGG-CGGCGuGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 2647 0.77 0.163183
Target:  5'- aCGCGGGCGGGcagcggcggcuCCCGCCGCGCu--- -3'
miRNA:   3'- gGCGCUCGCCCu----------GGGCGGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 10928 0.77 0.166785
Target:  5'- gCCGCGAcaacccccuucucGCGGGGCCCGCCcccagaCGCGUGg -3'
miRNA:   3'- -GGCGCU-------------CGCCCUGGGCGGc-----GUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 59027 0.77 0.163183
Target:  5'- gCCGCcagGAaCGGGugCCGCCGCGCGaGCu -3'
miRNA:   3'- -GGCG---CUcGCCCugGGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 133027 0.77 0.171285
Target:  5'- cCCGCGGGCGcGccACCgCGCaCGCACGUGCu -3'
miRNA:   3'- -GGCGCUCGCcC--UGG-GCG-GCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 102962 0.77 0.151676
Target:  5'- gCCGCGGGCGccgcGGGCuccgCCGCCGCGCGcgACa -3'
miRNA:   3'- -GGCGCUCGC----CCUG----GGCGGCGUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 29417 0.76 0.188573
Target:  5'- aCGCGGcggccGCGGGGCCCGCgGCcguguuCGUGCc -3'
miRNA:   3'- gGCGCU-----CGCCCUGGGCGgCGu-----GCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.