Results 41 - 60 of 417 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 124916 | 0.74 | 0.238605 |
Target: 5'- aCGCGGgaagccGCGGaGGCuCCGCCGCGCGcGCu -3' miRNA: 3'- gGCGCU------CGCC-CUG-GGCGGCGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 95711 | 0.74 | 0.23314 |
Target: 5'- gCGCGGGCucgcgcucGGGCCCGCCGCGCu--- -3' miRNA: 3'- gGCGCUCGc-------CCUGGGCGGCGUGcaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 33765 | 0.74 | 0.249857 |
Target: 5'- cCCGCucGCGGGGCCCGCgGCgaGCGcuggGCc -3' miRNA: 3'- -GGCGcuCGCCCUGGGCGgCG--UGCa---UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 107746 | 0.74 | 0.252159 |
Target: 5'- gCCGCGGGgGGGGCCaCGCCccagcgcucgcuggcGCGCGg-- -3' miRNA: 3'- -GGCGCUCgCCCUGG-GCGG---------------CGUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 36944 | 0.74 | 0.249857 |
Target: 5'- cCUGCGcuGGCGcaaGGCCCGCCGCGCG-GCg -3' miRNA: 3'- -GGCGC--UCGCc--CUGGGCGGCGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 130569 | 0.74 | 0.261543 |
Target: 5'- cCCGcCGGGCGGaaGCgCCGCCGCGCGg-- -3' miRNA: 3'- -GGC-GCUCGCCc-UG-GGCGGCGUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 92591 | 0.74 | 0.255645 |
Target: 5'- gCGCGAGCGcagccGCUCGCgGCGCGUGCc -3' miRNA: 3'- gGCGCUCGCcc---UGGGCGgCGUGCAUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 3375 | 0.74 | 0.255645 |
Target: 5'- gCCGCGAGCGcGGccGCCaGCCGCGCcgGCa -3' miRNA: 3'- -GGCGCUCGC-CC--UGGgCGGCGUGcaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 125296 | 0.73 | 0.299267 |
Target: 5'- gCCGCGGGCGccGGACCCGCgGgCGCu--- -3' miRNA: 3'- -GGCGCUCGC--CCUGGGCGgC-GUGcaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 3450 | 0.73 | 0.273669 |
Target: 5'- -gGCGcGCGGGccGCCgCGCCGCGCGUc- -3' miRNA: 3'- ggCGCuCGCCC--UGG-GCGGCGUGCAug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 36569 | 0.73 | 0.299267 |
Target: 5'- gCCGagcuGAGCgGGGGCCCGCCGCGg---- -3' miRNA: 3'- -GGCg---CUCG-CCCUGGGCGGCGUgcaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 30076 | 0.73 | 0.30595 |
Target: 5'- aCGCGcuAGCGGcGcACCCGgaGCGCGUGCu -3' miRNA: 3'- gGCGC--UCGCC-C-UGGGCggCGUGCAUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 99012 | 0.73 | 0.30595 |
Target: 5'- gUCGCGAGCGGcGGCgCgGCgGCGCGcGCc -3' miRNA: 3'- -GGCGCUCGCC-CUG-GgCGgCGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 56166 | 0.73 | 0.273669 |
Target: 5'- -aGCG-GCGGGGCCCGCggggaggacgaCGCGCGgGCu -3' miRNA: 3'- ggCGCuCGCCCUGGGCG-----------GCGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 72872 | 0.73 | 0.292698 |
Target: 5'- aCCGCGGGCaGGuccgcCCCGCCGC-CGg-- -3' miRNA: 3'- -GGCGCUCGcCCu----GGGCGGCGuGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 525 | 0.73 | 0.284328 |
Target: 5'- gCGCGGGCGGGcggggggcaggGCggacggcggcucggCCGCCGCGCGgugACa -3' miRNA: 3'- gGCGCUCGCCC-----------UG--------------GGCGGCGUGCa--UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 118167 | 0.73 | 0.299267 |
Target: 5'- gUCGCG-GCGGGGCuuGCCGuCugGgccGCg -3' miRNA: 3'- -GGCGCuCGCCCUGggCGGC-GugCa--UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 138196 | 0.73 | 0.284328 |
Target: 5'- gCGCGGGCGGGcggggggcaggGCggacggcggcucggCCGCCGCGCGgugACa -3' miRNA: 3'- gGCGCUCGCCC-----------UG--------------GGCGGCGUGCa--UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 23197 | 0.73 | 0.292698 |
Target: 5'- gCGCGccGCGGGGCCCgcagcggcgGCCGCGCGc-- -3' miRNA: 3'- gGCGCu-CGCCCUGGG---------CGGCGUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 103862 | 0.73 | 0.30595 |
Target: 5'- gCCGCGgcggcGGCGGGGCggcgCCGCCGgGCG-GCg -3' miRNA: 3'- -GGCGC-----UCGCCCUG----GGCGGCgUGCaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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