miRNA display CGI


Results 61 - 80 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 3450 0.73 0.273669
Target:  5'- -gGCGcGCGGGccGCCgCGCCGCGCGUc- -3'
miRNA:   3'- ggCGCuCGCCC--UGG-GCGGCGUGCAug -5'
23619 3' -61.9 NC_005261.1 + 33587 0.72 0.319656
Target:  5'- cCCGCGAGCaccaGGGGCggCGCCgGCGCGgGCg -3'
miRNA:   3'- -GGCGCUCG----CCCUGg-GCGG-CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 81615 0.72 0.341068
Target:  5'- cCCGCG-GCGGGuucaGCaCCGCCGCgaGCGgcCa -3'
miRNA:   3'- -GGCGCuCGCCC----UG-GGCGGCG--UGCauG- -5'
23619 3' -61.9 NC_005261.1 + 17140 0.72 0.336704
Target:  5'- aCGCcGGCGGGucgacguagaccgucACCCGCgGCGCGgGCg -3'
miRNA:   3'- gGCGcUCGCCC---------------UGGGCGgCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 120967 0.72 0.348432
Target:  5'- cCCGCgGGGCGcGugCCGCCGCAggcccCGUAg -3'
miRNA:   3'- -GGCG-CUCGCcCugGGCGGCGU-----GCAUg -5'
23619 3' -61.9 NC_005261.1 + 30153 0.72 0.348432
Target:  5'- gCGCGccuuAGCGGcGccgcGCCCGCCGCGC-UGCg -3'
miRNA:   3'- gGCGC----UCGCC-C----UGGGCGGCGUGcAUG- -5'
23619 3' -61.9 NC_005261.1 + 13668 0.72 0.341068
Target:  5'- gCCGCGGGgGGGGCgCGgggCGCGCGgGCg -3'
miRNA:   3'- -GGCGCUCgCCCUGgGCg--GCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 31986 0.72 0.341068
Target:  5'- cCCGCGcaccGCGGugcccGugCCGCCGCGCGa-- -3'
miRNA:   3'- -GGCGCu---CGCC-----CugGGCGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 136574 0.72 0.340338
Target:  5'- gCGCGGGUGGGcgggcgcagagacGCCCGgCGCAgCGUGg -3'
miRNA:   3'- gGCGCUCGCCC-------------UGGGCgGCGU-GCAUg -5'
23619 3' -61.9 NC_005261.1 + 15782 0.72 0.333817
Target:  5'- gCCGCuGGCGGG-CgCCGCCcGCGCGgcCa -3'
miRNA:   3'- -GGCGcUCGCCCuG-GGCGG-CGUGCauG- -5'
23619 3' -61.9 NC_005261.1 + 10516 0.72 0.326679
Target:  5'- gCCGCu-GCGGGcCCCGCgGCGCGc-- -3'
miRNA:   3'- -GGCGcuCGCCCuGGGCGgCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 31305 0.72 0.333817
Target:  5'- gCCGcCGcGCGGGGCCCGCgGgCGCGc-- -3'
miRNA:   3'- -GGC-GCuCGCCCUGGGCGgC-GUGCaug -5'
23619 3' -61.9 NC_005261.1 + 107692 0.72 0.341068
Target:  5'- gCCGCG-GCgGGGGCgCCGCCGaACGUcGCu -3'
miRNA:   3'- -GGCGCuCG-CCCUG-GGCGGCgUGCA-UG- -5'
23619 3' -61.9 NC_005261.1 + 72476 0.72 0.341068
Target:  5'- gCGCGAGCGcGGCCagcgccaggagCGCCGCGCGa-- -3'
miRNA:   3'- gGCGCUCGCcCUGG-----------GCGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 118926 0.72 0.333098
Target:  5'- gCCGCGGGCGcGGcgccgcgcggcugGCCgCGgCGCACGUGg -3'
miRNA:   3'- -GGCGCUCGC-CC-------------UGG-GCgGCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 49071 0.72 0.326679
Target:  5'- uUCGCGaAGCGGGcacgcgccgcggGCCCGCUgaGCGCGcGCa -3'
miRNA:   3'- -GGCGC-UCGCCC------------UGGGCGG--CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 31625 0.72 0.312746
Target:  5'- cUCGCGAcGCGGGACcuggccuuCCGCgGCGCGg-- -3'
miRNA:   3'- -GGCGCU-CGCCCUG--------GGCGgCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 90031 0.72 0.312746
Target:  5'- cCCGgGAGCGGGGcuuCCUGCUGC-CGgACa -3'
miRNA:   3'- -GGCgCUCGCCCU---GGGCGGCGuGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 98307 0.72 0.326679
Target:  5'- cUCGgGGGCGGG-CgCCGCCGCcaGCGgcgGCg -3'
miRNA:   3'- -GGCgCUCGCCCuG-GGCGGCG--UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 116517 0.72 0.312746
Target:  5'- gCCGCG-GCGGcgcgaGGCCCGCCGCucCGcGCc -3'
miRNA:   3'- -GGCGCuCGCC-----CUGGGCGGCGu-GCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.