miRNA display CGI


Results 21 - 40 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 43571 0.76 0.179745
Target:  5'- uCCGCGAGCGGcGCuUCGCCGUGCGcgACg -3'
miRNA:   3'- -GGCGCUCGCCcUG-GGCGGCGUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 44023 0.76 0.188573
Target:  5'- gCGCG-GCGGGcGgCCGCCGCGCGgcgGCc -3'
miRNA:   3'- gGCGCuCGCCC-UgGGCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 29417 0.76 0.188573
Target:  5'- aCGCGGcggccGCGGGGCCCGCgGCcguguuCGUGCc -3'
miRNA:   3'- gGCGCU-----CGCCCUGGGCGgCGu-----GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 74683 0.76 0.188573
Target:  5'- aCGCGAccgcGCGGGAgcuggCCGCCGCGCGgGCg -3'
miRNA:   3'- gGCGCU----CGCCCUg----GGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 109882 0.76 0.19221
Target:  5'- cCCGCGGGCGGGcgccccggggcuacaGCCCcuggaccgccgggauGCUGCACGUGu -3'
miRNA:   3'- -GGCGCUCGCCC---------------UGGG---------------CGGCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 4460 0.75 0.207377
Target:  5'- uCCaGCG-GCGGcGGCCCGUCGCGCG-GCg -3'
miRNA:   3'- -GG-CGCuCGCC-CUGGGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 82881 0.75 0.207377
Target:  5'- gCGCuGGCGGuGGCCuCGCCGCGCGccgACg -3'
miRNA:   3'- gGCGcUCGCC-CUGG-GCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 90436 0.75 0.207377
Target:  5'- aCGUGGGCGGGcGCgCGCUGCACuuuGUGCg -3'
miRNA:   3'- gGCGCUCGCCC-UGgGCGGCGUG---CAUG- -5'
23619 3' -61.9 NC_005261.1 + 21807 0.75 0.212325
Target:  5'- gCCGgcCGGGCcGGGCCCGCggcgggCGCGCGUGCg -3'
miRNA:   3'- -GGC--GCUCGcCCUGGGCG------GCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 101877 0.75 0.222526
Target:  5'- uCCGCGcGCaGGGcGCCCaGCCGCGCGcGCu -3'
miRNA:   3'- -GGCGCuCG-CCC-UGGG-CGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 86902 0.75 0.224615
Target:  5'- uCCGCGcgcGGCGcGGACCCgcguccaccgccgccGCCGCGCGcgGCg -3'
miRNA:   3'- -GGCGC---UCGC-CCUGGG---------------CGGCGUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 51400 0.74 0.23314
Target:  5'- uCCGCGAGCGGaGCCCGCgCGCccaccGCcUGCu -3'
miRNA:   3'- -GGCGCUCGCCcUGGGCG-GCG-----UGcAUG- -5'
23619 3' -61.9 NC_005261.1 + 95711 0.74 0.23314
Target:  5'- gCGCGGGCucgcgcucGGGCCCGCCGCGCu--- -3'
miRNA:   3'- gGCGCUCGc-------CCUGGGCGGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 33487 0.74 0.238605
Target:  5'- cCCGCucGCGGGGCCCGCgaGCACcagggGCg -3'
miRNA:   3'- -GGCGcuCGCCCUGGGCGg-CGUGca---UG- -5'
23619 3' -61.9 NC_005261.1 + 74283 0.74 0.238605
Target:  5'- gCgGCGGGCGGGGCggUCGCCGC-CGgGCa -3'
miRNA:   3'- -GgCGCUCGCCCUG--GGCGGCGuGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 124916 0.74 0.238605
Target:  5'- aCGCGGgaagccGCGGaGGCuCCGCCGCGCGcGCu -3'
miRNA:   3'- gGCGCU------CGCC-CUG-GGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 30946 0.74 0.243615
Target:  5'- cUCGgGGGCGGGccucgagGCCCGCCGCgACGg-- -3'
miRNA:   3'- -GGCgCUCGCCC-------UGGGCGGCG-UGCaug -5'
23619 3' -61.9 NC_005261.1 + 127491 0.74 0.244177
Target:  5'- aCGCuGGCGGcuGCCUGCCGgGCGUACu -3'
miRNA:   3'- gGCGcUCGCCc-UGGGCGGCgUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 73607 0.74 0.249857
Target:  5'- gCCGCGAGCGcGcGGCCCGUCGuCGucuuccccagccCGUGCg -3'
miRNA:   3'- -GGCGCUCGC-C-CUGGGCGGC-GU------------GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 11864 0.74 0.249857
Target:  5'- gCGCGAgcgucagcuGCGGGgcgaGCCCGcCCGCACGcGCg -3'
miRNA:   3'- gGCGCU---------CGCCC----UGGGC-GGCGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.