miRNA display CGI


Results 41 - 60 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 33765 0.74 0.249857
Target:  5'- cCCGCucGCGGGGCCCGCgGCgaGCGcuggGCc -3'
miRNA:   3'- -GGCGcuCGCCCUGGGCGgCG--UGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 36944 0.74 0.249857
Target:  5'- cCUGCGcuGGCGcaaGGCCCGCCGCGCG-GCg -3'
miRNA:   3'- -GGCGC--UCGCc--CUGGGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 107746 0.74 0.252159
Target:  5'- gCCGCGGGgGGGGCCaCGCCccagcgcucgcuggcGCGCGg-- -3'
miRNA:   3'- -GGCGCUCgCCCUGG-GCGG---------------CGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 92591 0.74 0.255645
Target:  5'- gCGCGAGCGcagccGCUCGCgGCGCGUGCc -3'
miRNA:   3'- gGCGCUCGCcc---UGGGCGgCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 3375 0.74 0.255645
Target:  5'- gCCGCGAGCGcGGccGCCaGCCGCGCcgGCa -3'
miRNA:   3'- -GGCGCUCGC-CC--UGGgCGGCGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 128807 0.74 0.257991
Target:  5'- cCCGCG-GCGGGGCUCGCgcugcggcugacgcuCGCGCGgcugGCc -3'
miRNA:   3'- -GGCGCuCGCCCUGGGCG---------------GCGUGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 105123 0.74 0.261543
Target:  5'- gCGCGGGCGcGGG-CCGCCgGCGCGcGCa -3'
miRNA:   3'- gGCGCUCGC-CCUgGGCGG-CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 130569 0.74 0.261543
Target:  5'- cCCGcCGGGCGGaaGCgCCGCCGCGCGg-- -3'
miRNA:   3'- -GGC-GCUCGCCc-UG-GGCGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 3481 0.73 0.273669
Target:  5'- aCCGCGccAGCGGGGCcacgguucgcgCCGCCaGCGCGgcCg -3'
miRNA:   3'- -GGCGC--UCGCCCUG-----------GGCGG-CGUGCauG- -5'
23619 3' -61.9 NC_005261.1 + 3450 0.73 0.273669
Target:  5'- -gGCGcGCGGGccGCCgCGCCGCGCGUc- -3'
miRNA:   3'- ggCGCuCGCCC--UGG-GCGGCGUGCAug -5'
23619 3' -61.9 NC_005261.1 + 56166 0.73 0.273669
Target:  5'- -aGCG-GCGGGGCCCGCggggaggacgaCGCGCGgGCu -3'
miRNA:   3'- ggCGCuCGCCCUGGGCG-----------GCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 525 0.73 0.284328
Target:  5'- gCGCGGGCGGGcggggggcaggGCggacggcggcucggCCGCCGCGCGgugACa -3'
miRNA:   3'- gGCGCUCGCCC-----------UG--------------GGCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 138196 0.73 0.284328
Target:  5'- gCGCGGGCGGGcggggggcaggGCggacggcggcucggCCGCCGCGCGgugACa -3'
miRNA:   3'- gGCGCUCGCCC-----------UG--------------GGCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 72872 0.73 0.292698
Target:  5'- aCCGCGGGCaGGuccgcCCCGCCGC-CGg-- -3'
miRNA:   3'- -GGCGCUCGcCCu----GGGCGGCGuGCaug -5'
23619 3' -61.9 NC_005261.1 + 23197 0.73 0.292698
Target:  5'- gCGCGccGCGGGGCCCgcagcggcgGCCGCGCGc-- -3'
miRNA:   3'- gGCGCu-CGCCCUGGG---------CGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 36569 0.73 0.299267
Target:  5'- gCCGagcuGAGCgGGGGCCCGCCGCGg---- -3'
miRNA:   3'- -GGCg---CUCG-CCCUGGGCGGCGUgcaug -5'
23619 3' -61.9 NC_005261.1 + 118167 0.73 0.299267
Target:  5'- gUCGCG-GCGGGGCuuGCCGuCugGgccGCg -3'
miRNA:   3'- -GGCGCuCGCCCUGggCGGC-GugCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 125296 0.73 0.299267
Target:  5'- gCCGCGGGCGccGGACCCGCgGgCGCu--- -3'
miRNA:   3'- -GGCGCUCGC--CCUGGGCGgC-GUGcaug -5'
23619 3' -61.9 NC_005261.1 + 30076 0.73 0.30595
Target:  5'- aCGCGcuAGCGGcGcACCCGgaGCGCGUGCu -3'
miRNA:   3'- gGCGC--UCGCC-C-UGGGCggCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 103862 0.73 0.30595
Target:  5'- gCCGCGgcggcGGCGGGGCggcgCCGCCGgGCG-GCg -3'
miRNA:   3'- -GGCGC-----UCGCCCUG----GGCGGCgUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.