Results 61 - 80 of 417 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 99012 | 0.73 | 0.30595 |
Target: 5'- gUCGCGAGCGGcGGCgCgGCgGCGCGcGCc -3' miRNA: 3'- -GGCGCUCGCC-CUG-GgCGgCGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 90031 | 0.72 | 0.312746 |
Target: 5'- cCCGgGAGCGGGGcuuCCUGCUGC-CGgACa -3' miRNA: 3'- -GGCgCUCGCCCU---GGGCGGCGuGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 31625 | 0.72 | 0.312746 |
Target: 5'- cUCGCGAcGCGGGACcuggccuuCCGCgGCGCGg-- -3' miRNA: 3'- -GGCGCU-CGCCCUG--------GGCGgCGUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 116517 | 0.72 | 0.312746 |
Target: 5'- gCCGCG-GCGGcgcgaGGCCCGCCGCucCGcGCc -3' miRNA: 3'- -GGCGCuCGCC-----CUGGGCGGCGu-GCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 21221 | 0.72 | 0.319656 |
Target: 5'- gCCGCGAcgGCGGG-CCCGUCgGCugGcgGCu -3' miRNA: 3'- -GGCGCU--CGCCCuGGGCGG-CGugCa-UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 33587 | 0.72 | 0.319656 |
Target: 5'- cCCGCGAGCaccaGGGGCggCGCCgGCGCGgGCg -3' miRNA: 3'- -GGCGCUCG----CCCUGg-GCGG-CGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 10516 | 0.72 | 0.326679 |
Target: 5'- gCCGCu-GCGGGcCCCGCgGCGCGc-- -3' miRNA: 3'- -GGCGcuCGCCCuGGGCGgCGUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 49071 | 0.72 | 0.326679 |
Target: 5'- uUCGCGaAGCGGGcacgcgccgcggGCCCGCUgaGCGCGcGCa -3' miRNA: 3'- -GGCGC-UCGCCC------------UGGGCGG--CGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 98307 | 0.72 | 0.326679 |
Target: 5'- cUCGgGGGCGGG-CgCCGCCGCcaGCGgcgGCg -3' miRNA: 3'- -GGCgCUCGCCCuG-GGCGGCG--UGCa--UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 118926 | 0.72 | 0.333098 |
Target: 5'- gCCGCGGGCGcGGcgccgcgcggcugGCCgCGgCGCACGUGg -3' miRNA: 3'- -GGCGCUCGC-CC-------------UGG-GCgGCGUGCAUg -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 15782 | 0.72 | 0.333817 |
Target: 5'- gCCGCuGGCGGG-CgCCGCCcGCGCGgcCa -3' miRNA: 3'- -GGCGcUCGCCCuG-GGCGG-CGUGCauG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 4570 | 0.72 | 0.333817 |
Target: 5'- uCCGCGGGCGGGuCCgGCgGgGCGc-- -3' miRNA: 3'- -GGCGCUCGCCCuGGgCGgCgUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 31305 | 0.72 | 0.333817 |
Target: 5'- gCCGcCGcGCGGGGCCCGCgGgCGCGc-- -3' miRNA: 3'- -GGC-GCuCGCCCUGGGCGgC-GUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 32547 | 0.72 | 0.333817 |
Target: 5'- gCCGCGGcGCGGG--CCGgCGCGCGUGg -3' miRNA: 3'- -GGCGCU-CGCCCugGGCgGCGUGCAUg -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 29678 | 0.72 | 0.333817 |
Target: 5'- aCGCGcuGUGGG-CgCUGCCGCACGUGg -3' miRNA: 3'- gGCGCu-CGCCCuG-GGCGGCGUGCAUg -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 17140 | 0.72 | 0.336704 |
Target: 5'- aCGCcGGCGGGucgacguagaccgucACCCGCgGCGCGgGCg -3' miRNA: 3'- gGCGcUCGCCC---------------UGGGCGgCGUGCaUG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 136574 | 0.72 | 0.340338 |
Target: 5'- gCGCGGGUGGGcgggcgcagagacGCCCGgCGCAgCGUGg -3' miRNA: 3'- gGCGCUCGCCC-------------UGGGCgGCGU-GCAUg -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 31986 | 0.72 | 0.341068 |
Target: 5'- cCCGCGcaccGCGGugcccGugCCGCCGCGCGa-- -3' miRNA: 3'- -GGCGCu---CGCC-----CugGGCGGCGUGCaug -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 107692 | 0.72 | 0.341068 |
Target: 5'- gCCGCG-GCgGGGGCgCCGCCGaACGUcGCu -3' miRNA: 3'- -GGCGCuCG-CCCUG-GGCGGCgUGCA-UG- -5' |
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23619 | 3' | -61.9 | NC_005261.1 | + | 13668 | 0.72 | 0.341068 |
Target: 5'- gCCGCGGGgGGGGCgCGgggCGCGCGgGCg -3' miRNA: 3'- -GGCGCUCgCCCUGgGCg--GCGUGCaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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