miRNA display CGI


Results 41 - 60 of 417 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 95185 0.66 0.652785
Target:  5'- aCGUGccccAGCccuGGGACCCGCgccgcccgccCGCGCgGUGCg -3'
miRNA:   3'- gGCGC----UCG---CCCUGGGCG----------GCGUG-CAUG- -5'
23619 3' -61.9 NC_005261.1 + 110907 0.66 0.652785
Target:  5'- aCUGCGAcGCGacGGuguuCCUGCCGCGCuggGCa -3'
miRNA:   3'- -GGCGCU-CGC--CCu---GGGCGGCGUGca-UG- -5'
23619 3' -61.9 NC_005261.1 + 114977 0.66 0.652785
Target:  5'- aCGCGucuuuauuGGCGGG-CCgGCCGcCGCGg-- -3'
miRNA:   3'- gGCGC--------UCGCCCuGGgCGGC-GUGCaug -5'
23619 3' -61.9 NC_005261.1 + 104427 0.66 0.651808
Target:  5'- gCCGCacagcuuGAGCGGGcccgcguCgCCGCCGC-CGgcgGCg -3'
miRNA:   3'- -GGCG-------CUCGCCCu------G-GGCGGCGuGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 100399 0.66 0.649855
Target:  5'- gCCGCcguuguccAGCGGGgggcgcaucgaggcGCCCGCCuGCGaGUACa -3'
miRNA:   3'- -GGCGc-------UCGCCC--------------UGGGCGG-CGUgCAUG- -5'
23619 3' -61.9 NC_005261.1 + 53461 0.66 0.643013
Target:  5'- gUCGcCGGGCGGGACgCaGCagGCGCGcACu -3'
miRNA:   3'- -GGC-GCUCGCCCUGgG-CGg-CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 47772 0.66 0.643013
Target:  5'- gCGCGucucccgguagaAGCGgaaGGGCCCGauCCGCGCGcGCa -3'
miRNA:   3'- gGCGC------------UCGC---CCUGGGC--GGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 162 0.66 0.643013
Target:  5'- -gGCGgaguuGGCGGGGCUggCGCCcCugGUGCu -3'
miRNA:   3'- ggCGC-----UCGCCCUGG--GCGGcGugCAUG- -5'
23619 3' -61.9 NC_005261.1 + 15967 0.66 0.643013
Target:  5'- -gGCGGGCGGGggaggGCCCggGCCGCucaccCGgGCa -3'
miRNA:   3'- ggCGCUCGCCC-----UGGG--CGGCGu----GCaUG- -5'
23619 3' -61.9 NC_005261.1 + 1291 0.66 0.643013
Target:  5'- -gGCcGGCGGGGcuCCCGUCGC-CGgcgGCg -3'
miRNA:   3'- ggCGcUCGCCCU--GGGCGGCGuGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 59546 0.66 0.643013
Target:  5'- aCCGCGcGCGGGcuucuaaUCGgCGCGCGcGCg -3'
miRNA:   3'- -GGCGCuCGCCCug-----GGCgGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 99398 0.66 0.643013
Target:  5'- cUCGCuGGGCGG---CUGCCGCACGaGCg -3'
miRNA:   3'- -GGCG-CUCGCCcugGGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 104585 0.66 0.643013
Target:  5'- gCUGCGcGCGcaucGCCUccgccaGCCGCGCGUACg -3'
miRNA:   3'- -GGCGCuCGCcc--UGGG------CGGCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 124764 0.66 0.643013
Target:  5'- gCCGCcuccaggcugagGAGCgGGGGCCCuuccgacaGCCGCuCGUcGCg -3'
miRNA:   3'- -GGCG------------CUCG-CCCUGGG--------CGGCGuGCA-UG- -5'
23619 3' -61.9 NC_005261.1 + 127265 0.66 0.643013
Target:  5'- gCGCuacGGcCGGGcccGCCCGCCGCGgGgGCa -3'
miRNA:   3'- gGCGc--UC-GCCC---UGGGCGGCGUgCaUG- -5'
23619 3' -61.9 NC_005261.1 + 137845 0.66 0.643013
Target:  5'- -gGCGgaguuGGCGGGGCUggCGCCcCugGUGCu -3'
miRNA:   3'- ggCGC-----UCGCCCUGG--GCGGcGugCAUG- -5'
23619 3' -61.9 NC_005261.1 + 68756 0.66 0.643013
Target:  5'- cCCGCcgGGGCGccgcGGAgCCGCCGUgucgaacuuCGUGCa -3'
miRNA:   3'- -GGCG--CUCGC----CCUgGGCGGCGu--------GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 106043 0.66 0.643013
Target:  5'- aCCGCGcuGCccGGCCCuagcGCCGCGuCGUACu -3'
miRNA:   3'- -GGCGCu-CGccCUGGG----CGGCGU-GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 110742 0.66 0.642036
Target:  5'- uUCGCcAGCGGGcugagcuACCUGCUGCAcCGcACa -3'
miRNA:   3'- -GGCGcUCGCCC-------UGGGCGGCGU-GCaUG- -5'
23619 3' -61.9 NC_005261.1 + 104269 0.66 0.642036
Target:  5'- gCCGCGGucucggcggcugcGCGGGccucgcagGCCCGCgCGCGCu--- -3'
miRNA:   3'- -GGCGCU-------------CGCCC--------UGGGCG-GCGUGcaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.