miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 97 0.67 0.574775
Target:  5'- gCGCGccccCGGGcCCCGCCGCccGCGccgGCg -3'
miRNA:   3'- gGCGCuc--GCCCuGGGCGGCG--UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 162 0.66 0.643013
Target:  5'- -gGCGgaguuGGCGGGGCUggCGCCcCugGUGCu -3'
miRNA:   3'- ggCGC-----UCGCCCUGG--GCGGcGugCAUG- -5'
23619 3' -61.9 NC_005261.1 + 238 0.79 0.112689
Target:  5'- cCCGCGAGCGGGcCCgGCUGCgGCGgcgGCu -3'
miRNA:   3'- -GGCGCUCGCCCuGGgCGGCG-UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 332 0.66 0.672275
Target:  5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3'
miRNA:   3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5'
23619 3' -61.9 NC_005261.1 + 525 0.73 0.284328
Target:  5'- gCGCGGGCGGGcggggggcaggGCggacggcggcucggCCGCCGCGCGgugACa -3'
miRNA:   3'- gGCGCUCGCCC-----------UG--------------GGCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 1182 0.7 0.403096
Target:  5'- gCCGCGGcCGGGGCCgggGCCGgGCGcgGCg -3'
miRNA:   3'- -GGCGCUcGCCCUGGg--CGGCgUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 1291 0.66 0.643013
Target:  5'- -gGCcGGCGGGGcuCCCGUCGC-CGgcgGCg -3'
miRNA:   3'- ggCGcUCGCCCU--GGGCGGCGuGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 1322 0.71 0.371199
Target:  5'- aCGCGcucCGGGACgCCGCCGCGCc-GCg -3'
miRNA:   3'- gGCGCuc-GCCCUG-GGCGGCGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 1409 0.68 0.517631
Target:  5'- gCCGCGgcggcGGCGGGggcggcGCCCGCCuccaGCACcaGCg -3'
miRNA:   3'- -GGCGC-----UCGCCC------UGGGCGG----CGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 1736 0.69 0.499072
Target:  5'- aCCGCGGuGCGcGGGCCCag-GCGCGUGg -3'
miRNA:   3'- -GGCGCU-CGC-CCUGGGcggCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 1786 0.71 0.378225
Target:  5'- gCCGCGgcagagccgcagcGGCGGcGCCCcgggguagaGCCGCGCGUAa -3'
miRNA:   3'- -GGCGC-------------UCGCCcUGGG---------CGGCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 1937 0.66 0.633234
Target:  5'- gCCGCGGGCaGcACCgCGgCGCGCagGUACa -3'
miRNA:   3'- -GGCGCUCGcCcUGG-GCgGCGUG--CAUG- -5'
23619 3' -61.9 NC_005261.1 + 2215 0.78 0.137141
Target:  5'- gCCGCGAGCaGGugcgagaGCCCGCCGCGCa--- -3'
miRNA:   3'- -GGCGCUCGcCC-------UGGGCGGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 2607 0.68 0.53646
Target:  5'- gCCGuCGgcGGCGGGG-CCGCCGgGCG-GCa -3'
miRNA:   3'- -GGC-GC--UCGCCCUgGGCGGCgUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 2647 0.77 0.163183
Target:  5'- aCGCGGGCGGGcagcggcggcuCCCGCCGCGCu--- -3'
miRNA:   3'- gGCGCUCGCCCu----------GGGCGGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 2747 0.66 0.672275
Target:  5'- gCCGCG-GCGGG--CCGUCGCgGCGgGCc -3'
miRNA:   3'- -GGCGCuCGCCCugGGCGGCG-UGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 3340 0.67 0.594177
Target:  5'- cCCGCGccGCGGcGCCCGgCGCGCcgGCc -3'
miRNA:   3'- -GGCGCu-CGCCcUGGGCgGCGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 3375 0.74 0.255645
Target:  5'- gCCGCGAGCGcGGccGCCaGCCGCGCcgGCa -3'
miRNA:   3'- -GGCGCUCGC-CC--UGGgCGGCGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 3450 0.73 0.273669
Target:  5'- -gGCGcGCGGGccGCCgCGCCGCGCGUc- -3'
miRNA:   3'- ggCGCuCGCCC--UGG-GCGGCGUGCAug -5'
23619 3' -61.9 NC_005261.1 + 3481 0.73 0.273669
Target:  5'- aCCGCGccAGCGGGGCcacgguucgcgCCGCCaGCGCGgcCg -3'
miRNA:   3'- -GGCGC--UCGCCCUG-----------GGCGG-CGUGCauG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.