miRNA display CGI


Results 21 - 40 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 3555 0.66 0.672275
Target:  5'- gCgGCGGGCGcGGCgCCGCUaagGCGCGcGCg -3'
miRNA:   3'- -GgCGCUCGCcCUG-GGCGG---CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 3846 0.67 0.574775
Target:  5'- -gGCGgcAGCGGcGCCggCGCCGCGCGgccgGCg -3'
miRNA:   3'- ggCGC--UCGCCcUGG--GCGGCGUGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 3901 0.68 0.555521
Target:  5'- gCGCGGcGCGGGcGCCCgcGCCGC-CG-GCg -3'
miRNA:   3'- gGCGCU-CGCCC-UGGG--CGGCGuGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 4363 0.67 0.574775
Target:  5'- cUCGCGAGUGucGCCCGCgccgccgaagCGCACGcgGCc -3'
miRNA:   3'- -GGCGCUCGCccUGGGCG----------GCGUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 4460 0.75 0.207377
Target:  5'- uCCaGCG-GCGGcGGCCCGUCGCGCG-GCg -3'
miRNA:   3'- -GG-CGCuCGCC-CUGGGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 4487 0.69 0.462888
Target:  5'- gCCGCGGcguagccugcGCGGGcCCCaGUCGCGCGcccGCg -3'
miRNA:   3'- -GGCGCU----------CGCCCuGGG-CGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 4570 0.72 0.333817
Target:  5'- uCCGCGGGCGGGuCCgGCgGgGCGc-- -3'
miRNA:   3'- -GGCGCUCGCCCuGGgCGgCgUGCaug -5'
23619 3' -61.9 NC_005261.1 + 5125 0.7 0.445319
Target:  5'- gCGCGGGCGG--CCCGCCgGCGCucGCg -3'
miRNA:   3'- gGCGCUCGCCcuGGGCGG-CGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 6257 0.67 0.574775
Target:  5'- cCCGCcccGCGGGgcgGCCCGCCGC-Ca--- -3'
miRNA:   3'- -GGCGcu-CGCCC---UGGGCGGCGuGcaug -5'
23619 3' -61.9 NC_005261.1 + 9646 0.68 0.508316
Target:  5'- -gGUGGGCGGGGCCCaCuCGgGCGgGCg -3'
miRNA:   3'- ggCGCUCGCCCUGGGcG-GCgUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 10222 0.68 0.535513
Target:  5'- cCCGCGccugcccaGGCGGGcccgcgcACUCGCCGcCGCGgGCc -3'
miRNA:   3'- -GGCGC--------UCGCCC-------UGGGCGGC-GUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 10473 0.67 0.603919
Target:  5'- gCC-CGAGCaGGccGGCCCGCUGCACcgGCu -3'
miRNA:   3'- -GGcGCUCG-CC--CUGGGCGGCGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 10516 0.72 0.326679
Target:  5'- gCCGCu-GCGGGcCCCGCgGCGCGc-- -3'
miRNA:   3'- -GGCGcuCGCCCuGGGCGgCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 10928 0.77 0.166785
Target:  5'- gCCGCGAcaacccccuucucGCGGGGCCCGCCcccagaCGCGUGg -3'
miRNA:   3'- -GGCGCU-------------CGCCCUGGGCGGc-----GUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 11105 0.68 0.517631
Target:  5'- aCGCGA-CGGGACgagaugCGCCGgcaGCGUGCg -3'
miRNA:   3'- gGCGCUcGCCCUGg-----GCGGCg--UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 11829 0.71 0.386932
Target:  5'- gUGgGGGCGGGGgcCCCGCgggCGCGCGUucGCg -3'
miRNA:   3'- gGCgCUCGCCCU--GGGCG---GCGUGCA--UG- -5'
23619 3' -61.9 NC_005261.1 + 11864 0.74 0.249857
Target:  5'- gCGCGAgcgucagcuGCGGGgcgaGCCCGcCCGCACGcGCg -3'
miRNA:   3'- gGCGCU---------CGCCC----UGGGC-GGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 11942 0.71 0.363499
Target:  5'- cCCGCGccGCGGcGGCUCGCCcgGCGCGcGCu -3'
miRNA:   3'- -GGCGCu-CGCC-CUGGGCGG--CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 12029 0.66 0.681979
Target:  5'- cCCGCGAcGCGcucgaGCCCcaGCCggaGCACGUACc -3'
miRNA:   3'- -GGCGCU-CGCcc---UGGG--CGG---CGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 12204 0.66 0.681979
Target:  5'- gCCGCc-GCcGGugCCGCCGC-CGcUGCu -3'
miRNA:   3'- -GGCGcuCGcCCugGGCGGCGuGC-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.