miRNA display CGI


Results 41 - 60 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 12518 0.67 0.58446
Target:  5'- aCCGC--GCGGGGCCCcgcGCCGC-CGc-- -3'
miRNA:   3'- -GGCGcuCGCCCUGGG---CGGCGuGCaug -5'
23619 3' -61.9 NC_005261.1 + 12643 0.68 0.555521
Target:  5'- gCGCG-GUcuGGGGCCgCGCCGgCGCG-ACa -3'
miRNA:   3'- gGCGCuCG--CCCUGG-GCGGC-GUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 13668 0.72 0.341068
Target:  5'- gCCGCGGGgGGGGCgCGgggCGCGCGgGCg -3'
miRNA:   3'- -GGCGCUCgCCCUGgGCg--GCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 13922 0.67 0.591259
Target:  5'- uCCGCGAucugcaccccggucGCGuugcGGCCCaGCCGCGCGgaaACg -3'
miRNA:   3'- -GGCGCU--------------CGCc---CUGGG-CGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 14766 0.69 0.471809
Target:  5'- gCCGCGAcaGgGGGGCCgCcCCGCGCagGUGCc -3'
miRNA:   3'- -GGCGCU--CgCCCUGG-GcGGCGUG--CAUG- -5'
23619 3' -61.9 NC_005261.1 + 14957 0.67 0.594177
Target:  5'- -aGCGAGCGGGcguGCCUGgggcgaCUGCGCGgccGCg -3'
miRNA:   3'- ggCGCUCGCCC---UGGGC------GGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 15311 0.68 0.555521
Target:  5'- gUCGUcgGAGCcGGGCCCGUCGaagcCGUGCa -3'
miRNA:   3'- -GGCG--CUCGcCCUGGGCGGCgu--GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 15500 0.71 0.371199
Target:  5'- gCUGCGGGCGGGGCgugUGUCG-GCGUGCa -3'
miRNA:   3'- -GGCGCUCGCCCUGg--GCGGCgUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 15730 0.68 0.565126
Target:  5'- aCGCGA-CGGGG-CCGuCCGCGCGcagGCc -3'
miRNA:   3'- gGCGCUcGCCCUgGGC-GGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 15782 0.72 0.333817
Target:  5'- gCCGCuGGCGGG-CgCCGCCcGCGCGgcCa -3'
miRNA:   3'- -GGCGcUCGCCCuG-GGCGG-CGUGCauG- -5'
23619 3' -61.9 NC_005261.1 + 15967 0.66 0.643013
Target:  5'- -gGCGGGCGGGggaggGCCCggGCCGCucaccCGgGCa -3'
miRNA:   3'- ggCGCUCGCCC-----UGGG--CGGCGu----GCaUG- -5'
23619 3' -61.9 NC_005261.1 + 16684 0.66 0.672275
Target:  5'- uCCGUGua-GGcGACCgCGCCGUcgAUGUACa -3'
miRNA:   3'- -GGCGCucgCC-CUGG-GCGGCG--UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 17140 0.72 0.336704
Target:  5'- aCGCcGGCGGGucgacguagaccgucACCCGCgGCGCGgGCg -3'
miRNA:   3'- gGCGcUCGCCC---------------UGGGCGgCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 17548 0.71 0.363499
Target:  5'- -gGCG-GCGcGGGCCCGCCGUucgGCGgugGCc -3'
miRNA:   3'- ggCGCuCGC-CCUGGGCGGCG---UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 17927 0.67 0.58446
Target:  5'- -aGCGAGUcGGGCCCGCUG-GCGUu- -3'
miRNA:   3'- ggCGCUCGcCCUGGGCGGCgUGCAug -5'
23619 3' -61.9 NC_005261.1 + 18262 0.68 0.53646
Target:  5'- aCUGUGAGCGuGACgCUGCC-CGCGUAg -3'
miRNA:   3'- -GGCGCUCGCcCUG-GGCGGcGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 18673 0.67 0.594177
Target:  5'- cCCaGCGGGCgaaGGGGCCCcaggcuguugcGgCGCACGUcgGCg -3'
miRNA:   3'- -GG-CGCUCG---CCCUGGG-----------CgGCGUGCA--UG- -5'
23619 3' -61.9 NC_005261.1 + 19239 0.67 0.61368
Target:  5'- cCCGCGAgacuGCGGGGgCgcugaacagCGCgCGCGgGUACg -3'
miRNA:   3'- -GGCGCU----CGCCCUgG---------GCG-GCGUgCAUG- -5'
23619 3' -61.9 NC_005261.1 + 19761 0.71 0.363499
Target:  5'- gCGCGGGCGcGGGCCCcGUCGCcuCGaACa -3'
miRNA:   3'- gGCGCUCGC-CCUGGG-CGGCGu-GCaUG- -5'
23619 3' -61.9 NC_005261.1 + 19876 0.68 0.53646
Target:  5'- cCCGCcGGCGGG-CCCGUCGuCGCc--- -3'
miRNA:   3'- -GGCGcUCGCCCuGGGCGGC-GUGcaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.