miRNA display CGI


Results 61 - 80 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 20568 0.68 0.517631
Target:  5'- gCUGCGcAGCGGcGCCgGCgGCGCGggugGCc -3'
miRNA:   3'- -GGCGC-UCGCCcUGGgCGgCGUGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 21221 0.72 0.319656
Target:  5'- gCCGCGAcgGCGGG-CCCGUCgGCugGcgGCu -3'
miRNA:   3'- -GGCGCU--CGCCCuGGGCGG-CGugCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 21637 0.7 0.428129
Target:  5'- cCCGCcccGGCGcGGACgCCGCUGCcgcaccgccgguACGUGCu -3'
miRNA:   3'- -GGCGc--UCGC-CCUG-GGCGGCG------------UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 21783 0.68 0.53646
Target:  5'- gCCGCGGcGCGGG--CCGCCGCAg---- -3'
miRNA:   3'- -GGCGCU-CGCCCugGGCGGCGUgcaug -5'
23619 3' -61.9 NC_005261.1 + 21807 0.75 0.212325
Target:  5'- gCCGgcCGGGCcGGGCCCGCggcgggCGCGCGUGCg -3'
miRNA:   3'- -GGC--GCUCGcCCUGGGCG------GCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 23197 0.73 0.292698
Target:  5'- gCGCGccGCGGGGCCCgcagcggcgGCCGCGCGc-- -3'
miRNA:   3'- gGCGCu-CGCCCUGGG---------CGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 23473 0.71 0.378225
Target:  5'- cCCGCGGcggcgaguGCGcGGGCCCGCCugggcagGCGCGgGCc -3'
miRNA:   3'- -GGCGCU--------CGC-CCUGGGCGG-------CGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 23534 0.68 0.555521
Target:  5'- -gGCGAGCGGcagaggcggcagGAgCCGUCGCAgGUGg -3'
miRNA:   3'- ggCGCUCGCC------------CUgGGCGGCGUgCAUg -5'
23619 3' -61.9 NC_005261.1 + 24066 0.68 0.555521
Target:  5'- cCCGCccGAGUGGGcCCCGCC-CACc--- -3'
miRNA:   3'- -GGCG--CUCGCCCuGGGCGGcGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 24522 0.69 0.480815
Target:  5'- cCUGUGAGCaaGGugucCCCGCC-CACGUACc -3'
miRNA:   3'- -GGCGCUCGc-CCu---GGGCGGcGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 27467 0.66 0.662541
Target:  5'- cCCGCgGGGCGGGcagGCCCuccCCGgGCGcACc -3'
miRNA:   3'- -GGCG-CUCGCCC---UGGGc--GGCgUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 27504 0.66 0.671303
Target:  5'- aCCGCcaggucuGGGCGGGccagcuggGCCCGCCcucGCACcuagGCg -3'
miRNA:   3'- -GGCG-------CUCGCCC--------UGGGCGG---CGUGca--UG- -5'
23619 3' -61.9 NC_005261.1 + 28781 0.69 0.454058
Target:  5'- gCCGCGGcGCGGGcGCUCGCgGCcgcgGCGgagGCa -3'
miRNA:   3'- -GGCGCU-CGCCC-UGGGCGgCG----UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 28877 0.69 0.489904
Target:  5'- gCUGCG-GCGcGGACgCCGCCGC-C-UGCg -3'
miRNA:   3'- -GGCGCuCGC-CCUG-GGCGGCGuGcAUG- -5'
23619 3' -61.9 NC_005261.1 + 29027 0.69 0.487168
Target:  5'- aCGCGAGgguuggggaugacaCGGGGgCCGCCGCcgccGCGgccgACa -3'
miRNA:   3'- gGCGCUC--------------GCCCUgGGCGGCG----UGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 29208 0.7 0.419683
Target:  5'- gCGCGGGCgcgcgacuGGGGCCCGC-GCAgGcUACg -3'
miRNA:   3'- gGCGCUCG--------CCCUGGGCGgCGUgC-AUG- -5'
23619 3' -61.9 NC_005261.1 + 29250 0.7 0.428129
Target:  5'- gCCGCGcGaCGGGcCgCCGCCGCugGa-- -3'
miRNA:   3'- -GGCGCuC-GCCCuG-GGCGGCGugCaug -5'
23619 3' -61.9 NC_005261.1 + 29417 0.76 0.188573
Target:  5'- aCGCGGcggccGCGGGGCCCGCgGCcguguuCGUGCc -3'
miRNA:   3'- gGCGCU-----CGCCCUGGGCGgCGu-----GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 29545 0.69 0.489904
Target:  5'- cUCGCGGGCccGGACCUGCaGCugGcGCg -3'
miRNA:   3'- -GGCGCUCGc-CCUGGGCGgCGugCaUG- -5'
23619 3' -61.9 NC_005261.1 + 29678 0.72 0.333817
Target:  5'- aCGCGcuGUGGG-CgCUGCCGCACGUGg -3'
miRNA:   3'- gGCGCu-CGCCCuG-GGCGGCGUGCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.