miRNA display CGI


Results 81 - 100 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 29809 0.67 0.574775
Target:  5'- gCCgGCGGcGCGGGcGCCCgcGCCGCGCu--- -3'
miRNA:   3'- -GG-CGCU-CGCCC-UGGG--CGGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 29886 0.7 0.411338
Target:  5'- gCCGCcAGCGcccGGGCCCGCggcagCGCGCGaGCg -3'
miRNA:   3'- -GGCGcUCGC---CCUGGGCG-----GCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 29956 0.68 0.512034
Target:  5'- gCCGCGAggcgcuagaggcggcGCGGuGCgCCGCCGgCGCGUccgGCa -3'
miRNA:   3'- -GGCGCU---------------CGCCcUG-GGCGGC-GUGCA---UG- -5'
23619 3' -61.9 NC_005261.1 + 30076 0.73 0.30595
Target:  5'- aCGCGcuAGCGGcGcACCCGgaGCGCGUGCu -3'
miRNA:   3'- gGCGC--UCGCC-C-UGGGCggCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 30153 0.72 0.348432
Target:  5'- gCGCGccuuAGCGGcGccgcGCCCGCCGCGC-UGCg -3'
miRNA:   3'- gGCGC----UCGCC-C----UGGGCGGCGUGcAUG- -5'
23619 3' -61.9 NC_005261.1 + 30263 0.69 0.489904
Target:  5'- gCGCGGcGCGGcGGCCCGCgCGCcCGccuggACg -3'
miRNA:   3'- gGCGCU-CGCC-CUGGGCG-GCGuGCa----UG- -5'
23619 3' -61.9 NC_005261.1 + 30946 0.74 0.243615
Target:  5'- cUCGgGGGCGGGccucgagGCCCGCCGCgACGg-- -3'
miRNA:   3'- -GGCgCUCGCCC-------UGGGCGGCG-UGCaug -5'
23619 3' -61.9 NC_005261.1 + 31004 0.66 0.681979
Target:  5'- gCCG-GGGCcaGGGGCCCGgCGC-CGgcCa -3'
miRNA:   3'- -GGCgCUCG--CCCUGGGCgGCGuGCauG- -5'
23619 3' -61.9 NC_005261.1 + 31058 0.81 0.092129
Target:  5'- gCGCG-GCGGGAgCCGCCGCugcccgcccGCGUGCu -3'
miRNA:   3'- gGCGCuCGCCCUgGGCGGCG---------UGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 31102 0.66 0.652785
Target:  5'- gCCGCccGGCGGc-CCCGCCGCcgACGgcgGCu -3'
miRNA:   3'- -GGCGc-UCGCCcuGGGCGGCG--UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 31305 0.72 0.333817
Target:  5'- gCCGcCGcGCGGGGCCCGCgGgCGCGc-- -3'
miRNA:   3'- -GGC-GCuCGCCCUGGGCGgC-GUGCaug -5'
23619 3' -61.9 NC_005261.1 + 31625 0.72 0.312746
Target:  5'- cUCGCGAcGCGGGACcuggccuuCCGCgGCGCGg-- -3'
miRNA:   3'- -GGCGCU-CGCCCUG--------GGCGgCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 31781 0.7 0.445319
Target:  5'- gCCGCG-GUGcuGCCCGCgGCGCaGUGCg -3'
miRNA:   3'- -GGCGCuCGCccUGGGCGgCGUG-CAUG- -5'
23619 3' -61.9 NC_005261.1 + 31905 0.69 0.480815
Target:  5'- aCGCGcGGCucuaccccGGGGCgCCGCCGCugGg-- -3'
miRNA:   3'- gGCGC-UCG--------CCCUG-GGCGGCGugCaug -5'
23619 3' -61.9 NC_005261.1 + 31986 0.72 0.341068
Target:  5'- cCCGCGcaccGCGGugcccGugCCGCCGCGCGa-- -3'
miRNA:   3'- -GGCGCu---CGCC-----CugGGCGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 32227 0.7 0.403096
Target:  5'- gCCGCG-GCGGuGGCCUucugcgcgGCCGCGC-UGCu -3'
miRNA:   3'- -GGCGCuCGCC-CUGGG--------CGGCGUGcAUG- -5'
23619 3' -61.9 NC_005261.1 + 32265 0.68 0.508316
Target:  5'- gCCGCacGCcGaGGCgCCGCCGCugGUGCu -3'
miRNA:   3'- -GGCGcuCGcC-CUG-GGCGGCGugCAUG- -5'
23619 3' -61.9 NC_005261.1 + 32351 0.67 0.594177
Target:  5'- aCGCGGacCaGGGCCCGCgggagaCGCugGUGCa -3'
miRNA:   3'- gGCGCUc-GcCCUGGGCG------GCGugCAUG- -5'
23619 3' -61.9 NC_005261.1 + 32391 0.71 0.379011
Target:  5'- gCGCG-GCGGcGuCCCGgaGCGCGUGCc -3'
miRNA:   3'- gGCGCuCGCC-CuGGGCggCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 32547 0.72 0.333817
Target:  5'- gCCGCGGcGCGGG--CCGgCGCGCGUGg -3'
miRNA:   3'- -GGCGCU-CGCCCugGGCgGCGUGCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.