miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 138196 0.73 0.284328
Target:  5'- gCGCGGGCGGGcggggggcaggGCggacggcggcucggCCGCCGCGCGgugACa -3'
miRNA:   3'- gGCGCUCGCCC-----------UG--------------GGCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 138003 0.66 0.672275
Target:  5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3'
miRNA:   3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5'
23619 3' -61.9 NC_005261.1 + 137921 0.79 0.112689
Target:  5'- cCCGCGAGCGGGcCCgGCUGCgGCGgcgGCu -3'
miRNA:   3'- -GGCGCUCGCCCuGGgCGGCG-UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 137845 0.66 0.643013
Target:  5'- -gGCGgaguuGGCGGGGCUggCGCCcCugGUGCu -3'
miRNA:   3'- ggCGC-----UCGCCCUGG--GCGGcGugCAUG- -5'
23619 3' -61.9 NC_005261.1 + 137780 0.67 0.574775
Target:  5'- gCGCGccccCGGGcCCCGCCGCccGCGccgGCg -3'
miRNA:   3'- gGCGCuc--GCCCuGGGCGGCG--UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 137670 0.69 0.489904
Target:  5'- gCGCGAcccCGGGGCCCcccaCCGCcccuCGUGCa -3'
miRNA:   3'- gGCGCUc--GCCCUGGGc---GGCGu---GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 136574 0.72 0.340338
Target:  5'- gCGCGGGUGGGcgggcgcagagacGCCCGgCGCAgCGUGg -3'
miRNA:   3'- gGCGCUCGCCC-------------UGGGCgGCGU-GCAUg -5'
23619 3' -61.9 NC_005261.1 + 135661 0.68 0.565126
Target:  5'- gCGCGGGCGGcccucGCUcgaggagcucugCGCCGCGCGgcgGCu -3'
miRNA:   3'- gGCGCUCGCCc----UGG------------GCGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 135455 0.68 0.565126
Target:  5'- gCGCGGgcgcuGCGGGACCuCGUacUGCGCG-GCg -3'
miRNA:   3'- gGCGCU-----CGCCCUGG-GCG--GCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 135052 0.7 0.403096
Target:  5'- cCUGCG-GCGGcagcGGCCCGCCGCuuucCGgcgGCg -3'
miRNA:   3'- -GGCGCuCGCC----CUGGGCGGCGu---GCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 135011 0.7 0.428129
Target:  5'- gCGCG-GCGGG-CCCGCaCGCggccGCGgcgGCg -3'
miRNA:   3'- gGCGCuCGCCCuGGGCG-GCG----UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 134870 0.69 0.480815
Target:  5'- cCCGCGcccccGCGGGcCCCuGCUGUGCGUuCg -3'
miRNA:   3'- -GGCGCu----CGCCCuGGG-CGGCGUGCAuG- -5'
23619 3' -61.9 NC_005261.1 + 134363 0.7 0.428129
Target:  5'- gCCGCGcGgGGGGCggCGCCGCugGcgACg -3'
miRNA:   3'- -GGCGCuCgCCCUGg-GCGGCGugCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 133397 0.66 0.633234
Target:  5'- -gGCGcGCGGcccaaaacaaGGCCCGCuCGCugGUGu -3'
miRNA:   3'- ggCGCuCGCC----------CUGGGCG-GCGugCAUg -5'
23619 3' -61.9 NC_005261.1 + 133027 0.77 0.171285
Target:  5'- cCCGCGGGCGcGccACCgCGCaCGCACGUGCu -3'
miRNA:   3'- -GGCGCUCGCcC--UGG-GCG-GCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 132642 0.68 0.508316
Target:  5'- aCGCGGGCGcGGcgGCCCuagcgGCCGCGUGUGg -3'
miRNA:   3'- gGCGCUCGC-CC--UGGG-----CGGCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 132327 0.67 0.58446
Target:  5'- cCCGCGGGgaccugcaCGGGGCcaugcgcagcuuCCGCCGCgGCGcGCu -3'
miRNA:   3'- -GGCGCUC--------GCCCUG------------GGCGGCG-UGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 132180 0.69 0.454058
Target:  5'- gCGCGGGCgGGGGCCCGCauuGCuuGg-- -3'
miRNA:   3'- gGCGCUCG-CCCUGGGCGg--CGugCaug -5'
23619 3' -61.9 NC_005261.1 + 131931 0.67 0.574775
Target:  5'- gCGCGcGCGGGACCgCGgugcCCGCGCc--- -3'
miRNA:   3'- gGCGCuCGCCCUGG-GC----GGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 131869 0.68 0.555521
Target:  5'- gCUGCuuGAGCuGGcGGCcgCCGCCGCACGcgACg -3'
miRNA:   3'- -GGCG--CUCG-CC-CUG--GGCGGCGUGCa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.