miRNA display CGI


Results 21 - 40 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 131769 0.7 0.419683
Target:  5'- gCGCG-GCGGG-CgCGCCGCugGg-- -3'
miRNA:   3'- gGCGCuCGCCCuGgGCGGCGugCaug -5'
23619 3' -61.9 NC_005261.1 + 131583 0.68 0.527014
Target:  5'- cCCGCGA-CGGccgaGGCCuacgcgcgCGCgCGCACGUACg -3'
miRNA:   3'- -GGCGCUcGCC----CUGG--------GCG-GCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 131479 0.68 0.545964
Target:  5'- uCCGCGAGCGcG-CCgucgaCGCCuucuuccgGCACGUGCg -3'
miRNA:   3'- -GGCGCUCGCcCuGG-----GCGG--------CGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 131194 0.7 0.419683
Target:  5'- cCCGCGGcGCGGucgccgccGGCgCGCC-CGCGUACg -3'
miRNA:   3'- -GGCGCU-CGCC--------CUGgGCGGcGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 130673 0.68 0.53646
Target:  5'- uCgGCGAGCcccuGCCCG-CGCGCGUGCu -3'
miRNA:   3'- -GgCGCUCGccc-UGGGCgGCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 130633 0.66 0.633234
Target:  5'- -aGCGcGCGGGgcgcgcgugcGCUCGCCGaCGCGcUGCu -3'
miRNA:   3'- ggCGCuCGCCC----------UGGGCGGC-GUGC-AUG- -5'
23619 3' -61.9 NC_005261.1 + 130569 0.74 0.261543
Target:  5'- cCCGcCGGGCGGaaGCgCCGCCGCGCGg-- -3'
miRNA:   3'- -GGC-GCUCGCCc-UG-GGCGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 130103 0.66 0.681979
Target:  5'- uCCGCGccAGCgacugcgccuuGGcGAgCCGCCGCGCGc-- -3'
miRNA:   3'- -GGCGC--UCG-----------CC-CUgGGCGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 129742 0.67 0.61368
Target:  5'- -gGCG-GCGGGGCCCGgCCuucaGCACcgGCg -3'
miRNA:   3'- ggCGCuCGCCCUGGGC-GG----CGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 129534 0.67 0.603919
Target:  5'- -gGCGcGCGGG-CUaCGCCGCAagGUGCa -3'
miRNA:   3'- ggCGCuCGCCCuGG-GCGGCGUg-CAUG- -5'
23619 3' -61.9 NC_005261.1 + 128807 0.74 0.257991
Target:  5'- cCCGCG-GCGGGGCUCGCgcugcggcugacgcuCGCGCGgcugGCc -3'
miRNA:   3'- -GGCGCuCGCCCUGGGCG---------------GCGUGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 128343 0.68 0.545964
Target:  5'- uCCGaGAGCGGcACCC-CgCGCGCGUAg -3'
miRNA:   3'- -GGCgCUCGCCcUGGGcG-GCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 127837 0.66 0.661566
Target:  5'- gCCGCGAGCagcggacGGGGCggUCGCgGCGCcaggGCa -3'
miRNA:   3'- -GGCGCUCG-------CCCUG--GGCGgCGUGca--UG- -5'
23619 3' -61.9 NC_005261.1 + 127808 0.69 0.499072
Target:  5'- gCCGCG-GCGGcGGgCCGCuCGCGCucGCg -3'
miRNA:   3'- -GGCGCuCGCC-CUgGGCG-GCGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 127761 0.67 0.58446
Target:  5'- gCCGCG-GCGGGcgcgaagacGCCCGgCUGCuCGaGCg -3'
miRNA:   3'- -GGCGCuCGCCC---------UGGGC-GGCGuGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 127491 0.74 0.244177
Target:  5'- aCGCuGGCGGcuGCCUGCCGgGCGUACu -3'
miRNA:   3'- gGCGcUCGCCc-UGGGCGGCgUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 127314 0.7 0.411338
Target:  5'- -gGCG-GUGGGGCCCuGCCGCccGCGgggGCc -3'
miRNA:   3'- ggCGCuCGCCCUGGG-CGGCG--UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 127265 0.66 0.643013
Target:  5'- gCGCuacGGcCGGGcccGCCCGCCGCGgGgGCa -3'
miRNA:   3'- gGCGc--UC-GCCC---UGGGCGGCGUgCaUG- -5'
23619 3' -61.9 NC_005261.1 + 126075 0.68 0.565126
Target:  5'- cCCGCcggccucGGCGGGcgcGCCCaucuUCGCGCGUACu -3'
miRNA:   3'- -GGCGc------UCGCCC---UGGGc---GGCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 125913 0.71 0.394961
Target:  5'- aUGUGuGGCGGGGCUCGCCaCGCGcACg -3'
miRNA:   3'- gGCGC-UCGCCCUGGGCGGcGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.