miRNA display CGI


Results 41 - 60 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 125821 0.78 0.13748
Target:  5'- gCCGCGAGCGGGGCCgGaCCGgGCuuUGCa -3'
miRNA:   3'- -GGCGCUCGCCCUGGgC-GGCgUGc-AUG- -5'
23619 3' -61.9 NC_005261.1 + 125720 0.69 0.499072
Target:  5'- gCCGCGGGCucggcuGGGG-CCGCCGCAaGgggGCc -3'
miRNA:   3'- -GGCGCUCG------CCCUgGGCGGCGUgCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 125296 0.73 0.299267
Target:  5'- gCCGCGGGCGccGGACCCGCgGgCGCu--- -3'
miRNA:   3'- -GGCGCUCGC--CCUGGGCGgC-GUGcaug -5'
23619 3' -61.9 NC_005261.1 + 124916 0.74 0.238605
Target:  5'- aCGCGGgaagccGCGGaGGCuCCGCCGCGCGcGCu -3'
miRNA:   3'- gGCGCU------CGCC-CUG-GGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 124764 0.66 0.643013
Target:  5'- gCCGCcuccaggcugagGAGCgGGGGCCCuuccgacaGCCGCuCGUcGCg -3'
miRNA:   3'- -GGCG------------CUCG-CCCUGGG--------CGGCGuGCA-UG- -5'
23619 3' -61.9 NC_005261.1 + 124246 0.68 0.545964
Target:  5'- gCCGCGGGCaGG---CGCCGCGCG-GCg -3'
miRNA:   3'- -GGCGCUCGcCCuggGCGGCGUGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 123194 0.71 0.35591
Target:  5'- gUGUGGGCGG-ACCCaGCCGcCGCGUAa -3'
miRNA:   3'- gGCGCUCGCCcUGGG-CGGC-GUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 123026 0.69 0.489904
Target:  5'- uCCGCGAGCGucggcagcaGGcaccccuucucuGCCCGCCGCuCGa-- -3'
miRNA:   3'- -GGCGCUCGC---------CC------------UGGGCGGCGuGCaug -5'
23619 3' -61.9 NC_005261.1 + 122632 0.83 0.066121
Target:  5'- aCgGCGAGCGcGaGGCCCGgCGCGCGUACg -3'
miRNA:   3'- -GgCGCUCGC-C-CUGGGCgGCGUGCAUG- -5'
23619 3' -61.9 NC_005261.1 + 121387 0.68 0.545964
Target:  5'- cCCGCGgcGGCGGcGCCUGCC-CGaGUGCg -3'
miRNA:   3'- -GGCGC--UCGCCcUGGGCGGcGUgCAUG- -5'
23619 3' -61.9 NC_005261.1 + 121023 0.66 0.681979
Target:  5'- cCCGCuGGcGCGGGagaaGCgCCGCCaCACGUcGCg -3'
miRNA:   3'- -GGCG-CU-CGCCC----UG-GGCGGcGUGCA-UG- -5'
23619 3' -61.9 NC_005261.1 + 120967 0.72 0.348432
Target:  5'- cCCGCgGGGCGcGugCCGCCGCAggcccCGUAg -3'
miRNA:   3'- -GGCG-CUCGCcCugGGCGGCGU-----GCAUg -5'
23619 3' -61.9 NC_005261.1 + 119579 0.68 0.508316
Target:  5'- gCUGCGAGCGcGaGACCgugGCCGCccCGUAUg -3'
miRNA:   3'- -GGCGCUCGC-C-CUGGg--CGGCGu-GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 119535 0.66 0.681979
Target:  5'- cCCGCggccGAGCaaGGcCCCGCCGCGgGgccGCa -3'
miRNA:   3'- -GGCG----CUCGc-CCuGGGCGGCGUgCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 119278 0.7 0.436676
Target:  5'- cUCGCuGGGCgGGGGCUCGCCGaggaaGCGgaggGCg -3'
miRNA:   3'- -GGCG-CUCG-CCCUGGGCGGCg----UGCa---UG- -5'
23619 3' -61.9 NC_005261.1 + 119134 0.69 0.499072
Target:  5'- gCCGCGGcGCGgccaucucGGAUCCGCcCGCGCGc-- -3'
miRNA:   3'- -GGCGCU-CGC--------CCUGGGCG-GCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 118926 0.72 0.333098
Target:  5'- gCCGCGGGCGcGGcgccgcgcggcugGCCgCGgCGCACGUGg -3'
miRNA:   3'- -GGCGCUCGC-CC-------------UGG-GCgGCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 118722 0.68 0.565126
Target:  5'- gUCGCGGGCGGGcacggcgucgcGCUCGCCgaGCACc--- -3'
miRNA:   3'- -GGCGCUCGCCC-----------UGGGCGG--CGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 118635 0.7 0.428129
Target:  5'- gCCGCGgcGGCGcucuGGGCCCcggGCCGCGCGc-- -3'
miRNA:   3'- -GGCGC--UCGC----CCUGGG---CGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 118552 0.69 0.462001
Target:  5'- gCGCGcGCGaGGacgccguGCCCGCgCGCGCGgcgGCg -3'
miRNA:   3'- gGCGCuCGC-CC-------UGGGCG-GCGUGCa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.