miRNA display CGI


Results 61 - 80 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 3' -61.9 NC_005261.1 + 118167 0.73 0.299267
Target:  5'- gUCGCG-GCGGGGCuuGCCGuCugGgccGCg -3'
miRNA:   3'- -GGCGCuCGCCCUGggCGGC-GugCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 118083 0.71 0.35591
Target:  5'- gCCGCGcucgucuGCuGGcGGCCCGCCGCGCa--- -3'
miRNA:   3'- -GGCGCu------CG-CC-CUGGGCGGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 118028 0.7 0.411338
Target:  5'- aCGCacGCGGGGCCCGgCCGCgACGcccGCg -3'
miRNA:   3'- gGCGcuCGCCCUGGGC-GGCG-UGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 117908 0.66 0.656689
Target:  5'- -gGUGAGCGGcugcgcgggaacgaaGGCCgGCUGCGgccCGUGCg -3'
miRNA:   3'- ggCGCUCGCC---------------CUGGgCGGCGU---GCAUG- -5'
23619 3' -61.9 NC_005261.1 + 117713 0.68 0.516697
Target:  5'- gCCgGCGcGCGGG-CCCgcaagcgGCCGCGCGcugGCg -3'
miRNA:   3'- -GG-CGCuCGCCCuGGG-------CGGCGUGCa--UG- -5'
23619 3' -61.9 NC_005261.1 + 117674 0.67 0.603919
Target:  5'- gCCGCGcccGGCcGGGCCCGCgGCGag-GCc -3'
miRNA:   3'- -GGCGC---UCGcCCUGGGCGgCGUgcaUG- -5'
23619 3' -61.9 NC_005261.1 + 117633 0.67 0.594177
Target:  5'- aCCGCGc-CGGGcCCgCGCCGCGCc--- -3'
miRNA:   3'- -GGCGCucGCCCuGG-GCGGCGUGcaug -5'
23619 3' -61.9 NC_005261.1 + 116517 0.72 0.312746
Target:  5'- gCCGCG-GCGGcgcgaGGCCCGCCGCucCGcGCc -3'
miRNA:   3'- -GGCGCuCGCC-----CUGGGCGGCGu-GCaUG- -5'
23619 3' -61.9 NC_005261.1 + 116481 0.69 0.462888
Target:  5'- gCGCGGGCGGGG-CgGgCGCGCgGUAUa -3'
miRNA:   3'- gGCGCUCGCCCUgGgCgGCGUG-CAUG- -5'
23619 3' -61.9 NC_005261.1 + 115581 0.7 0.445319
Target:  5'- aCGCG-GCGaGGaACUgGCCGUACGUGa -3'
miRNA:   3'- gGCGCuCGC-CC-UGGgCGGCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 115412 0.69 0.498152
Target:  5'- aCCGCGGGCGGcagccggggccgcGGCCCGagcuCGCGCucGCg -3'
miRNA:   3'- -GGCGCUCGCC-------------CUGGGCg---GCGUGcaUG- -5'
23619 3' -61.9 NC_005261.1 + 114977 0.66 0.652785
Target:  5'- aCGCGucuuuauuGGCGGG-CCgGCCGcCGCGg-- -3'
miRNA:   3'- gGCGC--------UCGCCCuGGgCGGC-GUGCaug -5'
23619 3' -61.9 NC_005261.1 + 113925 0.69 0.480815
Target:  5'- -aGCGGgcGCGGcGACCC-UCGCACGUAa -3'
miRNA:   3'- ggCGCU--CGCC-CUGGGcGGCGUGCAUg -5'
23619 3' -61.9 NC_005261.1 + 113564 0.69 0.470913
Target:  5'- aCCGCGAGCaguggucGGuGgCCGCCGCGCuggGCg -3'
miRNA:   3'- -GGCGCUCG-------CCcUgGGCGGCGUGca-UG- -5'
23619 3' -61.9 NC_005261.1 + 113307 0.76 0.179745
Target:  5'- gCCGCGGGCcuGGGCCCgGCUGCGCGa-- -3'
miRNA:   3'- -GGCGCUCGc-CCUGGG-CGGCGUGCaug -5'
23619 3' -61.9 NC_005261.1 + 113011 0.68 0.53646
Target:  5'- aUGCuGGGCGGGcaguACCCcacagagcggGCCGCGCGcgGCg -3'
miRNA:   3'- gGCG-CUCGCCC----UGGG----------CGGCGUGCa-UG- -5'
23619 3' -61.9 NC_005261.1 + 112179 0.7 0.411338
Target:  5'- gCCGCGcGCGGGGCUCGCUGgccaGC-UGCu -3'
miRNA:   3'- -GGCGCuCGCCCUGGGCGGCg---UGcAUG- -5'
23619 3' -61.9 NC_005261.1 + 111244 0.67 0.574775
Target:  5'- cCCGCGGcCGGGcccaggccACCUGCCGCugagaGCGaGCa -3'
miRNA:   3'- -GGCGCUcGCCC--------UGGGCGGCG-----UGCaUG- -5'
23619 3' -61.9 NC_005261.1 + 111019 0.68 0.545964
Target:  5'- cUCGCc-GCGGGucACCUGCCGCAgCGaGCg -3'
miRNA:   3'- -GGCGcuCGCCC--UGGGCGGCGU-GCaUG- -5'
23619 3' -61.9 NC_005261.1 + 110990 0.69 0.462888
Target:  5'- uUCGUGcGCcugGGGACgCUGCCGCACG-ACu -3'
miRNA:   3'- -GGCGCuCG---CCCUG-GGCGGCGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.