Results 41 - 60 of 417 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 64054 | 0.66 | 0.681979 |
Target: 5'- gCCGCGugguGCGccACCggcUGCCGCACGgugGCg -3' miRNA: 3'- -GGCGCu---CGCccUGG---GCGGCGUGCa--UG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 68686 | 0.66 | 0.681979 |
Target: 5'- gCCGCGuG-GGGGCCgGCgCGgACG-ACg -3' miRNA: 3'- -GGCGCuCgCCCUGGgCG-GCgUGCaUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 130103 | 0.66 | 0.681979 |
Target: 5'- uCCGCGccAGCgacugcgccuuGGcGAgCCGCCGCGCGc-- -3' miRNA: 3'- -GGCGC--UCG-----------CC-CUgGGCGGCGUGCaug -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 85407 | 0.66 | 0.681979 |
Target: 5'- cCCGCGAGCccGAgCaCGCgCGCGCGcGCc -3' miRNA: 3'- -GGCGCUCGccCUgG-GCG-GCGUGCaUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 119535 | 0.66 | 0.681979 |
Target: 5'- cCCGCggccGAGCaaGGcCCCGCCGCGgGgccGCa -3' miRNA: 3'- -GGCG----CUCGc-CCuGGGCGGCGUgCa--UG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 68832 | 0.66 | 0.676161 |
Target: 5'- gCCGUGGcggcccccccgucccGCGGGgacGCCCucuGCCGCGgcUGUGCg -3' miRNA: 3'- -GGCGCU---------------CGCCC---UGGG---CGGCGU--GCAUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 104790 | 0.66 | 0.672275 |
Target: 5'- gCCGCGAucgcgugcuccaGCGGGuCCCGCUcCGCa--- -3' miRNA: 3'- -GGCGCU------------CGCCCuGGGCGGcGUGcaug -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 62807 | 0.66 | 0.662541 |
Target: 5'- --uCGGGCuGGGCCauauCGCCGCGCGggGCa -3' miRNA: 3'- ggcGCUCGcCCUGG----GCGGCGUGCa-UG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 27467 | 0.66 | 0.662541 |
Target: 5'- cCCGCgGGGCGGGcagGCCCuccCCGgGCGcACc -3' miRNA: 3'- -GGCG-CUCGCCC---UGGGc--GGCgUGCaUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 76932 | 0.66 | 0.662541 |
Target: 5'- gCCGCGu-CGGGACCa-UCGuUACGUACg -3' miRNA: 3'- -GGCGCucGCCCUGGgcGGC-GUGCAUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 67431 | 0.66 | 0.662541 |
Target: 5'- cCCGCG-GCcagcgcccaaaGGGcagccgguccGCCCGCaCGCccGCGUACa -3' miRNA: 3'- -GGCGCuCG-----------CCC----------UGGGCG-GCG--UGCAUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 107904 | 0.66 | 0.662541 |
Target: 5'- uCCGCGGccGCGGccucGGCCacgaguGCCGCGCGg-- -3' miRNA: 3'- -GGCGCU--CGCC----CUGGg-----CGGCGUGCaug -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 92729 | 0.66 | 0.669358 |
Target: 5'- gCGgGAGCGGGGCggggacagcgagcgCCGCcCGCGCc--- -3' miRNA: 3'- gGCgCUCGCCCUG--------------GGCG-GCGUGcaug -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 27504 | 0.66 | 0.671303 |
Target: 5'- aCCGCcaggucuGGGCGGGccagcuggGCCCGCCcucGCACcuagGCg -3' miRNA: 3'- -GGCG-------CUCGCCC--------UGGGCGG---CGUGca--UG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 332 | 0.66 | 0.672275 |
Target: 5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3' miRNA: 3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 3555 | 0.66 | 0.672275 |
Target: 5'- gCgGCGGGCGcGGCgCCGCUaagGCGCGcGCg -3' miRNA: 3'- -GgCGCUCGCcCUG-GGCGG---CGUGCaUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 138003 | 0.66 | 0.672275 |
Target: 5'- gCgGCGGcuGCGGcGGCCCGCagcccgGCGCGgcccgGCg -3' miRNA: 3'- -GgCGCU--CGCC-CUGGGCGg-----CGUGCa----UG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 2747 | 0.66 | 0.672275 |
Target: 5'- gCCGCG-GCGGG--CCGUCGCgGCGgGCc -3' miRNA: 3'- -GGCGCuCGCCCugGGCGGCG-UGCaUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 16684 | 0.66 | 0.672275 |
Target: 5'- uCCGUGua-GGcGACCgCGCCGUcgAUGUACa -3' miRNA: 3'- -GGCGCucgCC-CUGG-GCGGCG--UGCAUG- -5' |
|||||||
23619 | 3' | -61.9 | NC_005261.1 | + | 35098 | 0.66 | 0.672275 |
Target: 5'- gCCGCgguGAGCGGcGAgcccCCCaGCCGC-CGgcgGCg -3' miRNA: 3'- -GGCG---CUCGCC-CU----GGG-CGGCGuGCa--UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home