Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23619 | 5' | -53.9 | NC_005261.1 | + | 50656 | 0.66 | 0.956461 |
Target: 5'- cCGgcGaACGCGcucgcccaAGUCCGCGCCGu- -3' miRNA: 3'- aGCauCaUGUGCa-------UCAGGCGCGGCuu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 2501 | 0.66 | 0.948227 |
Target: 5'- -gGUGGUcCGCG-AG-CCGCGCCGc- -3' miRNA: 3'- agCAUCAuGUGCaUCaGGCGCGGCuu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 136940 | 0.66 | 0.948227 |
Target: 5'- -gGUGGUACAUGgg--CCGCGUCGu- -3' miRNA: 3'- agCAUCAUGUGCaucaGGCGCGGCuu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 85147 | 0.66 | 0.948227 |
Target: 5'- gCGUgaGGUugACGUAGUUgauggccgcguaCGCGuCCGAGa -3' miRNA: 3'- aGCA--UCAugUGCAUCAG------------GCGC-GGCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 42399 | 0.66 | 0.943748 |
Target: 5'- gCGcc-UGCACGUGGUUgGCGCgGAAg -3' miRNA: 3'- aGCaucAUGUGCAUCAGgCGCGgCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 51372 | 0.66 | 0.939023 |
Target: 5'- gCGgAGUACGCGcAGgCCGUGCgCGAAc -3' miRNA: 3'- aGCaUCAUGUGCaUCaGGCGCG-GCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 70783 | 0.66 | 0.934051 |
Target: 5'- aCGgcgAGaAgGCGUccagcagcucaaAGUCCGCGCCGGc -3' miRNA: 3'- aGCa--UCaUgUGCA------------UCAGGCGCGGCUu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 55827 | 0.66 | 0.934051 |
Target: 5'- gCGU-GUAUAaaggccggguCGUcccGGUCCGCGCCGGc -3' miRNA: 3'- aGCAuCAUGU----------GCA---UCAGGCGCGGCUu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 64168 | 0.66 | 0.934051 |
Target: 5'- aUCGc-GUGCAgGUGGUCCGgGCaggCGAAa -3' miRNA: 3'- -AGCauCAUGUgCAUCAGGCgCG---GCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 88467 | 0.67 | 0.928829 |
Target: 5'- gCGU-GUGgGCGggccGUgCCGCGCCGGAg -3' miRNA: 3'- aGCAuCAUgUGCau--CA-GGCGCGGCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 47074 | 0.67 | 0.917638 |
Target: 5'- gCGUGGUACGCGUG--Ca-CGCCGAAg -3' miRNA: 3'- aGCAUCAUGUGCAUcaGgcGCGGCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 62281 | 0.67 | 0.917638 |
Target: 5'- gUUGUGGUACAUcacGUCgGCGCCGc- -3' miRNA: 3'- -AGCAUCAUGUGcauCAGgCGCGGCuu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 107940 | 0.67 | 0.917638 |
Target: 5'- aUCGccgc-CACGUAGUCCGUGCgCGGc -3' miRNA: 3'- -AGCaucauGUGCAUCAGGCGCG-GCUu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 116086 | 0.67 | 0.905453 |
Target: 5'- cCGUGGaUGC-CGcGGUCCGCGaCGAAg -3' miRNA: 3'- aGCAUC-AUGuGCaUCAGGCGCgGCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 123275 | 0.68 | 0.898992 |
Target: 5'- aCGaGGUGCGgGUGGUCCgccaGCGCCu-- -3' miRNA: 3'- aGCaUCAUGUgCAUCAGG----CGCGGcuu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 54810 | 0.68 | 0.898992 |
Target: 5'- gCGUAGgcCACcaGGUCCGCGUCa-- -3' miRNA: 3'- aGCAUCauGUGcaUCAGGCGCGGcuu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 48803 | 0.68 | 0.885349 |
Target: 5'- cCGUGaggccGUGCGCGgcGUCCGCgacGCCGu- -3' miRNA: 3'- aGCAU-----CAUGUGCauCAGGCG---CGGCuu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 121649 | 0.68 | 0.878175 |
Target: 5'- cCGgcGaGCGCGggcuGUCCGCGUCGGc -3' miRNA: 3'- aGCauCaUGUGCau--CAGGCGCGGCUu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 106672 | 0.69 | 0.847245 |
Target: 5'- gUCGUccAGcGCGCGcccgAGggCCGCGCCGAu -3' miRNA: 3'- -AGCA--UCaUGUGCa---UCa-GGCGCGGCUu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 23719 | 0.7 | 0.776144 |
Target: 5'- -gGUGGcaaGCGgGUGG-CCGCGCCGAGg -3' miRNA: 3'- agCAUCa--UGUgCAUCaGGCGCGGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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