miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 5' -53.9 NC_005261.1 + 79561 1.07 0.00568
Target:  5'- cUCGUAGUACACGUAGUCCGCGCCGAAg -3'
miRNA:   3'- -AGCAUCAUGUGCAUCAGGCGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 108072 0.77 0.425043
Target:  5'- gUGUAGUGCGCGaggUAGUCgGCGCUGGg -3'
miRNA:   3'- aGCAUCAUGUGC---AUCAGgCGCGGCUu -5'
23619 5' -53.9 NC_005261.1 + 52249 0.77 0.407186
Target:  5'- uUCGUGGgaggGCGCu--GUCCGCGCCGGGg -3'
miRNA:   3'- -AGCAUCa---UGUGcauCAGGCGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 12059 0.75 0.540876
Target:  5'- aCGUaccggcGGUGCggcaGCGgcGUCCGCGCCGGGg -3'
miRNA:   3'- aGCA------UCAUG----UGCauCAGGCGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 106834 0.72 0.665414
Target:  5'- gCGUGGUGCGCGUcGUCCagccCGCCGc- -3'
miRNA:   3'- aGCAUCAUGUGCAuCAGGc---GCGGCuu -5'
23619 5' -53.9 NC_005261.1 + 71402 0.72 0.665414
Target:  5'- gCGUGGUAgGCGgcGUCCGgCGCgGGg -3'
miRNA:   3'- aGCAUCAUgUGCauCAGGC-GCGgCUu -5'
23619 5' -53.9 NC_005261.1 + 45624 0.71 0.737077
Target:  5'- gCGgcGcgGCGCGgcgGGcCCGCGCCGGAg -3'
miRNA:   3'- aGCauCa-UGUGCa--UCaGGCGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 114346 0.71 0.766555
Target:  5'- cUCG-AGcgGCGCGUGG-CCGCGgCCGAGu -3'
miRNA:   3'- -AGCaUCa-UGUGCAUCaGGCGC-GGCUU- -5'
23619 5' -53.9 NC_005261.1 + 12633 0.71 0.737077
Target:  5'- gUGUAGUccgGCGCGgucugGGgCCGCGCCGGc -3'
miRNA:   3'- aGCAUCA---UGUGCa----UCaGGCGCGGCUu -5'
23619 5' -53.9 NC_005261.1 + 50434 0.71 0.737077
Target:  5'- cUCGUGcagcGUGCGCGUGaagCUGCGCCGGc -3'
miRNA:   3'- -AGCAU----CAUGUGCAUca-GGCGCGGCUu -5'
23619 5' -53.9 NC_005261.1 + 23719 0.7 0.776144
Target:  5'- -gGUGGcaaGCGgGUGG-CCGCGCCGAGg -3'
miRNA:   3'- agCAUCa--UGUgCAUCaGGCGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 64584 0.7 0.772324
Target:  5'- gUCGUAGUGCACGcccaugcugcagcAGccgCCGCGCgCGAAg -3'
miRNA:   3'- -AGCAUCAUGUGCa------------UCa--GGCGCG-GCUU- -5'
23619 5' -53.9 NC_005261.1 + 106672 0.69 0.847245
Target:  5'- gUCGUccAGcGCGCGcccgAGggCCGCGCCGAu -3'
miRNA:   3'- -AGCA--UCaUGUGCa---UCa-GGCGCGGCUu -5'
23619 5' -53.9 NC_005261.1 + 48803 0.68 0.885349
Target:  5'- cCGUGaggccGUGCGCGgcGUCCGCgacGCCGu- -3'
miRNA:   3'- aGCAU-----CAUGUGCauCAGGCG---CGGCuu -5'
23619 5' -53.9 NC_005261.1 + 123275 0.68 0.898992
Target:  5'- aCGaGGUGCGgGUGGUCCgccaGCGCCu-- -3'
miRNA:   3'- aGCaUCAUGUgCAUCAGG----CGCGGcuu -5'
23619 5' -53.9 NC_005261.1 + 54810 0.68 0.898992
Target:  5'- gCGUAGgcCACcaGGUCCGCGUCa-- -3'
miRNA:   3'- aGCAUCauGUGcaUCAGGCGCGGcuu -5'
23619 5' -53.9 NC_005261.1 + 121649 0.68 0.878175
Target:  5'- cCGgcGaGCGCGggcuGUCCGCGUCGGc -3'
miRNA:   3'- aGCauCaUGUGCau--CAGGCGCGGCUu -5'
23619 5' -53.9 NC_005261.1 + 62281 0.67 0.917638
Target:  5'- gUUGUGGUACAUcacGUCgGCGCCGc- -3'
miRNA:   3'- -AGCAUCAUGUGcauCAGgCGCGGCuu -5'
23619 5' -53.9 NC_005261.1 + 116086 0.67 0.905453
Target:  5'- cCGUGGaUGC-CGcGGUCCGCGaCGAAg -3'
miRNA:   3'- aGCAUC-AUGuGCaUCAGGCGCgGCUU- -5'
23619 5' -53.9 NC_005261.1 + 47074 0.67 0.917638
Target:  5'- gCGUGGUACGCGUG--Ca-CGCCGAAg -3'
miRNA:   3'- aGCAUCAUGUGCAUcaGgcGCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.