miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23619 5' -53.9 NC_005261.1 + 51372 0.66 0.939023
Target:  5'- gCGgAGUACGCGcAGgCCGUGCgCGAAc -3'
miRNA:   3'- aGCaUCAUGUGCaUCaGGCGCG-GCUU- -5'
23619 5' -53.9 NC_005261.1 + 50656 0.66 0.956461
Target:  5'- cCGgcGaACGCGcucgcccaAGUCCGCGCCGu- -3'
miRNA:   3'- aGCauCaUGUGCa-------UCAGGCGCGGCuu -5'
23619 5' -53.9 NC_005261.1 + 50434 0.71 0.737077
Target:  5'- cUCGUGcagcGUGCGCGUGaagCUGCGCCGGc -3'
miRNA:   3'- -AGCAU----CAUGUGCAUca-GGCGCGGCUu -5'
23619 5' -53.9 NC_005261.1 + 48803 0.68 0.885349
Target:  5'- cCGUGaggccGUGCGCGgcGUCCGCgacGCCGu- -3'
miRNA:   3'- aGCAU-----CAUGUGCauCAGGCG---CGGCuu -5'
23619 5' -53.9 NC_005261.1 + 47074 0.67 0.917638
Target:  5'- gCGUGGUACGCGUG--Ca-CGCCGAAg -3'
miRNA:   3'- aGCAUCAUGUGCAUcaGgcGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 45624 0.71 0.737077
Target:  5'- gCGgcGcgGCGCGgcgGGcCCGCGCCGGAg -3'
miRNA:   3'- aGCauCa-UGUGCa--UCaGGCGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 42399 0.66 0.943748
Target:  5'- gCGcc-UGCACGUGGUUgGCGCgGAAg -3'
miRNA:   3'- aGCaucAUGUGCAUCAGgCGCGgCUU- -5'
23619 5' -53.9 NC_005261.1 + 23719 0.7 0.776144
Target:  5'- -gGUGGcaaGCGgGUGG-CCGCGCCGAGg -3'
miRNA:   3'- agCAUCa--UGUgCAUCaGGCGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 12633 0.71 0.737077
Target:  5'- gUGUAGUccgGCGCGgucugGGgCCGCGCCGGc -3'
miRNA:   3'- aGCAUCA---UGUGCa----UCaGGCGCGGCUu -5'
23619 5' -53.9 NC_005261.1 + 12059 0.75 0.540876
Target:  5'- aCGUaccggcGGUGCggcaGCGgcGUCCGCGCCGGGg -3'
miRNA:   3'- aGCA------UCAUG----UGCauCAGGCGCGGCUU- -5'
23619 5' -53.9 NC_005261.1 + 2501 0.66 0.948227
Target:  5'- -gGUGGUcCGCG-AG-CCGCGCCGc- -3'
miRNA:   3'- agCAUCAuGUGCaUCaGGCGCGGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.