Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23619 | 5' | -53.9 | NC_005261.1 | + | 42399 | 0.66 | 0.943748 |
Target: 5'- gCGcc-UGCACGUGGUUgGCGCgGAAg -3' miRNA: 3'- aGCaucAUGUGCAUCAGgCGCGgCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 51372 | 0.66 | 0.939023 |
Target: 5'- gCGgAGUACGCGcAGgCCGUGCgCGAAc -3' miRNA: 3'- aGCaUCAUGUGCaUCaGGCGCG-GCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 70783 | 0.66 | 0.934051 |
Target: 5'- aCGgcgAGaAgGCGUccagcagcucaaAGUCCGCGCCGGc -3' miRNA: 3'- aGCa--UCaUgUGCA------------UCAGGCGCGGCUu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 55827 | 0.66 | 0.934051 |
Target: 5'- gCGU-GUAUAaaggccggguCGUcccGGUCCGCGCCGGc -3' miRNA: 3'- aGCAuCAUGU----------GCA---UCAGGCGCGGCUu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 64168 | 0.66 | 0.934051 |
Target: 5'- aUCGc-GUGCAgGUGGUCCGgGCaggCGAAa -3' miRNA: 3'- -AGCauCAUGUgCAUCAGGCgCG---GCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 88467 | 0.67 | 0.928829 |
Target: 5'- gCGU-GUGgGCGggccGUgCCGCGCCGGAg -3' miRNA: 3'- aGCAuCAUgUGCau--CA-GGCGCGGCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 107940 | 0.67 | 0.917638 |
Target: 5'- aUCGccgc-CACGUAGUCCGUGCgCGGc -3' miRNA: 3'- -AGCaucauGUGCAUCAGGCGCG-GCUu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 62281 | 0.67 | 0.917638 |
Target: 5'- gUUGUGGUACAUcacGUCgGCGCCGc- -3' miRNA: 3'- -AGCAUCAUGUGcauCAGgCGCGGCuu -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 47074 | 0.67 | 0.917638 |
Target: 5'- gCGUGGUACGCGUG--Ca-CGCCGAAg -3' miRNA: 3'- aGCAUCAUGUGCAUcaGgcGCGGCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 116086 | 0.67 | 0.905453 |
Target: 5'- cCGUGGaUGC-CGcGGUCCGCGaCGAAg -3' miRNA: 3'- aGCAUC-AUGuGCaUCAGGCGCgGCUU- -5' |
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23619 | 5' | -53.9 | NC_005261.1 | + | 79561 | 1.07 | 0.00568 |
Target: 5'- cUCGUAGUACACGUAGUCCGCGCCGAAg -3' miRNA: 3'- -AGCAUCAUGUGCAUCAGGCGCGGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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