miRNA display CGI


Results 1 - 20 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 118124 0.66 0.570108
Target:  5'- cCGCCGGCucGCgCCGcucGGCCGGCucGCGc -3'
miRNA:   3'- cGUGGUCGu-CGgGGCa--CCGGUCG--CGC- -5'
23620 3' -63.3 NC_005261.1 + 66752 0.66 0.570108
Target:  5'- uGCACgGGCuGGUCCaccggguGUGGCCcgucGCGCGc -3'
miRNA:   3'- -CGUGgUCG-UCGGGg------CACCGGu---CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 11218 0.66 0.570108
Target:  5'- aCGCCGcGUGGCCCCcc-GCgGGCGCGc -3'
miRNA:   3'- cGUGGU-CGUCGGGGcacCGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 59985 0.66 0.570108
Target:  5'- gGCGCCGuccGCAcCCUCG-GG-CAGCGCGa -3'
miRNA:   3'- -CGUGGU---CGUcGGGGCaCCgGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 75558 0.66 0.570108
Target:  5'- -uGCCGGCcauCCCCGgggcgcugGGCggCGGCGCGg -3'
miRNA:   3'- cgUGGUCGuc-GGGGCa-------CCG--GUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 94261 0.66 0.570108
Target:  5'- gGCGCagGGCGGCgCCGcgaGGCUcuuGGCGCa -3'
miRNA:   3'- -CGUGg-UCGUCGgGGCa--CCGG---UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 113565 0.66 0.570108
Target:  5'- cCGCgAGCAGUggUCgGUGGCCGccGCGCu -3'
miRNA:   3'- cGUGgUCGUCG--GGgCACCGGU--CGCGc -5'
23620 3' -63.3 NC_005261.1 + 29319 0.66 0.570108
Target:  5'- cGCGCCGccgccGCccGGCCgCGUGcGCUucggcGGCGCGg -3'
miRNA:   3'- -CGUGGU-----CG--UCGGgGCAC-CGG-----UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 69423 0.66 0.570108
Target:  5'- cGCGCCGGC-GCaucaCGgagacGGgCAGCGCGg -3'
miRNA:   3'- -CGUGGUCGuCGgg--GCa----CCgGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 101449 0.66 0.570108
Target:  5'- cGguCCAGCgcuGGCCCCagcgccGCCGGCgGCGg -3'
miRNA:   3'- -CguGGUCG---UCGGGGcac---CGGUCG-CGC- -5'
23620 3' -63.3 NC_005261.1 + 104219 0.66 0.570108
Target:  5'- cGCGCgCGGCGcGCaCCGUGcccuCCAGCGCc -3'
miRNA:   3'- -CGUG-GUCGU-CGgGGCACc---GGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 131570 0.66 0.570108
Target:  5'- cGC-CCGGCuGCCCCccgcgacGGCCGaggccuacGCGCGc -3'
miRNA:   3'- -CGuGGUCGuCGGGGca-----CCGGU--------CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 79848 0.66 0.566217
Target:  5'- aGCGCUAGCcGCCgCGcugggguugagcuUGGCCgccucggcccacagGGCGCGc -3'
miRNA:   3'- -CGUGGUCGuCGGgGC-------------ACCGG--------------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 62996 0.66 0.560395
Target:  5'- --uCCAGcCGGCCCuCGgcGGCCGcgcccGCGCGg -3'
miRNA:   3'- cguGGUC-GUCGGG-GCa-CCGGU-----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 72490 0.66 0.560395
Target:  5'- aGCGCCAGgAGCgCCGcgcgaaGCgGGCGCc -3'
miRNA:   3'- -CGUGGUCgUCGgGGCac----CGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 108345 0.66 0.560395
Target:  5'- cGCGCCAGgGccGCCgCCGUcGCaGGCGCa -3'
miRNA:   3'- -CGUGGUCgU--CGG-GGCAcCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 127694 0.66 0.560395
Target:  5'- uGCcCCGGCGGCgCCGgagGaGCU-GCGCGu -3'
miRNA:   3'- -CGuGGUCGUCGgGGCa--C-CGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 135304 0.66 0.560395
Target:  5'- cGCgACCGGCGugucGCCCUGggcGGCC-GUGCu -3'
miRNA:   3'- -CG-UGGUCGU----CGGGGCa--CCGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 69006 0.66 0.560395
Target:  5'- gGCGCC-GCGGCUUCGuUGGCgAGUccgugGCGg -3'
miRNA:   3'- -CGUGGuCGUCGGGGC-ACCGgUCG-----CGC- -5'
23620 3' -63.3 NC_005261.1 + 45415 0.66 0.560395
Target:  5'- uGCugCGGCGccuGCgCCCGccGCCcGCGCGc -3'
miRNA:   3'- -CGugGUCGU---CG-GGGCacCGGuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.