Results 41 - 60 of 512 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 29319 | 0.66 | 0.570108 |
Target: 5'- cGCGCCGccgccGCccGGCCgCGUGcGCUucggcGGCGCGg -3' miRNA: 3'- -CGUGGU-----CG--UCGGgGCAC-CGG-----UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 69423 | 0.66 | 0.570108 |
Target: 5'- cGCGCCGGC-GCaucaCGgagacGGgCAGCGCGg -3' miRNA: 3'- -CGUGGUCGuCGgg--GCa----CCgGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 101449 | 0.66 | 0.570108 |
Target: 5'- cGguCCAGCgcuGGCCCCagcgccGCCGGCgGCGg -3' miRNA: 3'- -CguGGUCG---UCGGGGcac---CGGUCG-CGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 104219 | 0.66 | 0.570108 |
Target: 5'- cGCGCgCGGCGcGCaCCGUGcccuCCAGCGCc -3' miRNA: 3'- -CGUG-GUCGU-CGgGGCACc---GGUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 131570 | 0.66 | 0.570108 |
Target: 5'- cGC-CCGGCuGCCCCccgcgacGGCCGaggccuacGCGCGc -3' miRNA: 3'- -CGuGGUCGuCGGGGca-----CCGGU--------CGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 69006 | 0.66 | 0.560395 |
Target: 5'- gGCGCC-GCGGCUUCGuUGGCgAGUccgugGCGg -3' miRNA: 3'- -CGUGGuCGUCGGGGC-ACCGgUCG-----CGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 135304 | 0.66 | 0.560395 |
Target: 5'- cGCgACCGGCGugucGCCCUGggcGGCC-GUGCu -3' miRNA: 3'- -CG-UGGUCGU----CGGGGCa--CCGGuCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 32302 | 0.66 | 0.550728 |
Target: 5'- gGCGCCGcccccGCcGCCgCCGcGGCCgcGGCGCc -3' miRNA: 3'- -CGUGGU-----CGuCGG-GGCaCCGG--UCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 59256 | 0.66 | 0.550728 |
Target: 5'- gGCGCCGGC-GCCaCgCGUcGCaCGGCGUGu -3' miRNA: 3'- -CGUGGUCGuCGG-G-GCAcCG-GUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 67494 | 0.66 | 0.550728 |
Target: 5'- cCGCCGcCAGCCgCgCGUaguaGGCCAGCGUc -3' miRNA: 3'- cGUGGUcGUCGG-G-GCA----CCGGUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 37592 | 0.66 | 0.55749 |
Target: 5'- gGUACCAcacggccggucccuGCAGCUCCGgugaUGGCCucuacgccuagcGGCGCc -3' miRNA: 3'- -CGUGGU--------------CGUCGGGGC----ACCGG------------UCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 49984 | 0.66 | 0.55749 |
Target: 5'- gGCGCC-GCcgucgucccccccgAGCCgCGccGCCAGCGCGc -3' miRNA: 3'- -CGUGGuCG--------------UCGGgGCacCGGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 32157 | 0.66 | 0.559426 |
Target: 5'- cGCGCCGcuGCGGCCgguguaCC-UGGCCugcgggcGGCGCGc -3' miRNA: 3'- -CGUGGU--CGUCGG------GGcACCGG-------UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 109339 | 0.66 | 0.559426 |
Target: 5'- cGCGgggUCGGCGGCCgCGUcGCCguccagccgcucgAGCGCGg -3' miRNA: 3'- -CGU---GGUCGUCGGgGCAcCGG-------------UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 10246 | 0.66 | 0.560395 |
Target: 5'- cGCACUcGCcGCCgCG-GGCCuGGCGCc -3' miRNA: 3'- -CGUGGuCGuCGGgGCaCCGG-UCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 45415 | 0.66 | 0.560395 |
Target: 5'- uGCugCGGCGccuGCgCCCGccGCCcGCGCGc -3' miRNA: 3'- -CGugGUCGU---CG-GGGCacCGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 62996 | 0.66 | 0.560395 |
Target: 5'- --uCCAGcCGGCCCuCGgcGGCCGcgcccGCGCGg -3' miRNA: 3'- cguGGUC-GUCGGG-GCa-CCGGU-----CGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 72490 | 0.66 | 0.560395 |
Target: 5'- aGCGCCAGgAGCgCCGcgcgaaGCgGGCGCc -3' miRNA: 3'- -CGUGGUCgUCGgGGCac----CGgUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 108345 | 0.66 | 0.560395 |
Target: 5'- cGCGCCAGgGccGCCgCCGUcGCaGGCGCa -3' miRNA: 3'- -CGUGGUCgU--CGG-GGCAcCGgUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 127694 | 0.66 | 0.560395 |
Target: 5'- uGCcCCGGCGGCgCCGgagGaGCU-GCGCGu -3' miRNA: 3'- -CGuGGUCGUCGgGGCa--C-CGGuCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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