Results 101 - 120 of 512 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 1504 | 0.67 | 0.503269 |
Target: 5'- cGCgGCCGGCAGCUcgUCG-GGCgccagcucCAGCGCGc -3' miRNA: 3'- -CG-UGGUCGUCGG--GGCaCCG--------GUCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 113303 | 0.67 | 0.503269 |
Target: 5'- cGCugCcGCGGgCCUG-GGCCcggcuGCGCGa -3' miRNA: 3'- -CGugGuCGUCgGGGCaCCGGu----CGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 95604 | 0.67 | 0.503269 |
Target: 5'- cGCACCGGcCGGCUgC-UGGaCC-GCGCGg -3' miRNA: 3'- -CGUGGUC-GUCGGgGcACC-GGuCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 93456 | 0.67 | 0.503269 |
Target: 5'- aGCACCGGCcccAGCgCgGU-GCCGGgGCGc -3' miRNA: 3'- -CGUGGUCG---UCGgGgCAcCGGUCgCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 58027 | 0.67 | 0.503269 |
Target: 5'- cGCGgCGGCAGCUCCaGggagcgcGGCC-GCGUGa -3' miRNA: 3'- -CGUgGUCGUCGGGG-Ca------CCGGuCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 37757 | 0.67 | 0.503269 |
Target: 5'- gGCGCCGcGCcGCCCaagcGCCGGCGCc -3' miRNA: 3'- -CGUGGU-CGuCGGGgcacCGGUCGCGc -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 28840 | 0.67 | 0.503269 |
Target: 5'- cGCgGCUgaGGCGGCCgUCGUGGCCGcCGCc -3' miRNA: 3'- -CG-UGG--UCGUCGG-GGCACCGGUcGCGc -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 2445 | 0.67 | 0.503269 |
Target: 5'- -gGCCAGC-GCCUCGgggucgaaGGCgAGCGCc -3' miRNA: 3'- cgUGGUCGuCGGGGCa-------CCGgUCGCGc -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 11049 | 0.67 | 0.503269 |
Target: 5'- gGCACUcgGGCGccGCCCaggCGccGCCAGCGCGu -3' miRNA: 3'- -CGUGG--UCGU--CGGG---GCacCGGUCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 42824 | 0.67 | 0.503269 |
Target: 5'- cGCGCCGGCcggAGCaCCUGggcgaUGGCagAGUGCGa -3' miRNA: 3'- -CGUGGUCG---UCG-GGGC-----ACCGg-UCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 65527 | 0.67 | 0.503269 |
Target: 5'- uCACCcagcGCGGCCgCGcgGGCagCAGCGCGu -3' miRNA: 3'- cGUGGu---CGUCGGgGCa-CCG--GUCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 87064 | 0.67 | 0.507004 |
Target: 5'- aGCGCCAccGCGGCCgggcccagcacguagCCGUGcagCAGCGCGc -3' miRNA: 3'- -CGUGGU--CGUCGG---------------GGCACcg-GUCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 92196 | 0.67 | 0.503269 |
Target: 5'- cCGCCGcuggcGCAGCCgCCGaaGCCGGCGUc -3' miRNA: 3'- cGUGGU-----CGUCGG-GGCacCGGUCGCGc -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 91471 | 0.67 | 0.503269 |
Target: 5'- cGCGCCucccAGCGGCgCCGccgcGGCCGccgcccgccccGCGCGc -3' miRNA: 3'- -CGUGG----UCGUCGgGGCa---CCGGU-----------CGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 15893 | 0.67 | 0.503269 |
Target: 5'- cGCGCgGGCGcuuuaucucccGCCCCGcgcagccggGGCCGGgGCc -3' miRNA: 3'- -CGUGgUCGU-----------CGGGGCa--------CCGGUCgCGc -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 130105 | 0.67 | 0.503269 |
Target: 5'- cGCGCCAGCGacugcGCCuuGgcgaGCCGccGCGCGc -3' miRNA: 3'- -CGUGGUCGU-----CGGggCac--CGGU--CGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 108739 | 0.67 | 0.503269 |
Target: 5'- cCAgCGGCGGCgCCGcGGCguccgCGGCGCGc -3' miRNA: 3'- cGUgGUCGUCGgGGCaCCG-----GUCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 74207 | 0.67 | 0.503269 |
Target: 5'- uCGCCAGCAacgcgccgcGCCUCGaGGCUauaauagccgGGCGCGc -3' miRNA: 3'- cGUGGUCGU---------CGGGGCaCCGG----------UCGCGC- -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 69616 | 0.67 | 0.503269 |
Target: 5'- cGCGCCcGCcGCCCgGcacGGCguGCGCu -3' miRNA: 3'- -CGUGGuCGuCGGGgCa--CCGguCGCGc -5' |
|||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 130774 | 0.67 | 0.503269 |
Target: 5'- aGCAgCUGGC-GCCCCGcgcUGGCCGcacCGCGg -3' miRNA: 3'- -CGU-GGUCGuCGGGGC---ACCGGUc--GCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home