miRNA display CGI


Results 21 - 40 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 14353 0.77 0.109526
Target:  5'- aGCGgCAGCAGCCgCGgccgGGgCGGCGCGg -3'
miRNA:   3'- -CGUgGUCGUCGGgGCa---CCgGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 103108 0.77 0.1152
Target:  5'- -gGCCAGCGcCCCCG-GcGCCAGCGCGc -3'
miRNA:   3'- cgUGGUCGUcGGGGCaC-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 46305 0.77 0.109526
Target:  5'- cGCGCCgcAGUAGCCCCGcgaggcugcgcuUGGCCAuGCGCc -3'
miRNA:   3'- -CGUGG--UCGUCGGGGC------------ACCGGU-CGCGc -5'
23620 3' -63.3 NC_005261.1 + 18740 0.77 0.11491
Target:  5'- gGCGCCccaaaacAGCGGCCCCGcagagcagGGCCAGgGCa -3'
miRNA:   3'- -CGUGG-------UCGUCGGGGCa-------CCGGUCgCGc -5'
23620 3' -63.3 NC_005261.1 + 68674 0.77 0.118139
Target:  5'- cCGCCGGCGuccGCCgCGUgggGGCCGGCGCGg -3'
miRNA:   3'- cGUGGUCGU---CGGgGCA---CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 106804 0.77 0.112046
Target:  5'- cGCACCAGC-GCCgaGUGGCCcgccagcAGCGCGu -3'
miRNA:   3'- -CGUGGUCGuCGGggCACCGG-------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 118864 0.77 0.109526
Target:  5'- cGCGCCcGCGGCCCUGgccucGGCCAcCGCGg -3'
miRNA:   3'- -CGUGGuCGUCGGGGCa----CCGGUcGCGC- -5'
23620 3' -63.3 NC_005261.1 + 57384 0.76 0.133574
Target:  5'- cCGCCAGCAGCucggggagcgcgCCCGUgauccgcGGCCGGCGCc -3'
miRNA:   3'- cGUGGUCGUCG------------GGGCA-------CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 78846 0.76 0.140742
Target:  5'- aCGCCGGCGGCgCCCGccGCCggAGCGCGa -3'
miRNA:   3'- cGUGGUCGUCG-GGGCacCGG--UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 84286 0.76 0.12738
Target:  5'- cCGCCGGCGGCCCCGgccccGGC-GGCGCc -3'
miRNA:   3'- cGUGGUCGUCGGGGCa----CCGgUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 2242 0.76 0.140742
Target:  5'- cGCACCGGCGGCCaCUcaGGCCgccGGCGCu -3'
miRNA:   3'- -CGUGGUCGUCGG-GGcaCCGG---UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 94362 0.76 0.124228
Target:  5'- gGCACaCAGCgcacGGCCggUCGaUGGCCAGCGCGg -3'
miRNA:   3'- -CGUG-GUCG----UCGG--GGC-ACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 79821 0.76 0.124228
Target:  5'- uGCGCgCGGCGGCgCgGcGGCCAGCGCa -3'
miRNA:   3'- -CGUG-GUCGUCGgGgCaCCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 102288 0.76 0.124228
Target:  5'- cGCGCCAGCGGCCgCG-GGUCGuagccGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGgGCaCCGGU-----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 101573 0.76 0.12738
Target:  5'- uGCGCuCGGCGcGCgCCGUGGCCuccGCGCGc -3'
miRNA:   3'- -CGUG-GUCGU-CGgGGCACCGGu--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 100127 0.76 0.12738
Target:  5'- cGCACCGGCcgcAGCCCCcgcucGGCCAGCGa- -3'
miRNA:   3'- -CGUGGUCG---UCGGGGca---CCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 99657 0.76 0.12738
Target:  5'- cGCGCCAGCAcGCUgaCCGUcGUCAGCGCGc -3'
miRNA:   3'- -CGUGGUCGU-CGG--GGCAcCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 12321 0.75 0.163201
Target:  5'- -aGCCGGCGGgCgCGcgcuUGGCCGGCGCGg -3'
miRNA:   3'- cgUGGUCGUCgGgGC----ACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 12154 0.75 0.147895
Target:  5'- cGCGCaGGCcccaAGCCCCGcacaGGCCAGCGCc -3'
miRNA:   3'- -CGUGgUCG----UCGGGGCa---CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 131209 0.75 0.144278
Target:  5'- cCGCCGGCGcGCCCgcguaCGUGGCCGcGCGCa -3'
miRNA:   3'- cGUGGUCGU-CGGG-----GCACCGGU-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.