Results 41 - 60 of 512 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23620 | 3' | -63.3 | NC_005261.1 | + | 12321 | 0.75 | 0.163201 |
Target: 5'- -aGCCGGCGGgCgCGcgcuUGGCCGGCGCGg -3' miRNA: 3'- cgUGGUCGUCgGgGC----ACCGGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 12154 | 0.75 | 0.147895 |
Target: 5'- cGCGCaGGCcccaAGCCCCGcacaGGCCAGCGCc -3' miRNA: 3'- -CGUGgUCG----UCGGGGCa---CCGGUCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 100210 | 0.75 | 0.154996 |
Target: 5'- -gGCCAGCAGCCCCGcguagagcucGGCCaccgccgGGCGCa -3' miRNA: 3'- cgUGGUCGUCGGGGCa---------CCGG-------UCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 105285 | 0.75 | 0.159246 |
Target: 5'- aGCGCCGGCgAGCCCgGgcgcGCgAGCGCGg -3' miRNA: 3'- -CGUGGUCG-UCGGGgCac--CGgUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 84562 | 0.75 | 0.163201 |
Target: 5'- aGCGCCuggAGCacGGCCCCGUagacggccgucuGcGCCAGCGCGc -3' miRNA: 3'- -CGUGG---UCG--UCGGGGCA------------C-CGGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 68975 | 0.75 | 0.147895 |
Target: 5'- cGCGCCAccGCGGCCCUuuucgGGCC-GCGCGg -3' miRNA: 3'- -CGUGGU--CGUCGGGGca---CCGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 35689 | 0.75 | 0.151594 |
Target: 5'- cCGCCGGCgAGCCCCGgugGGCCGGgGg- -3' miRNA: 3'- cGUGGUCG-UCGGGGCa--CCGGUCgCgc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 103585 | 0.75 | 0.151594 |
Target: 5'- cGCGCCGucGCucGCCgCCGUGGCCgcggcggcAGCGCGg -3' miRNA: 3'- -CGUGGU--CGu-CGG-GGCACCGG--------UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 74893 | 0.74 | 0.171377 |
Target: 5'- gGCGgagUCGGCGGCCCgCGcUGGCC-GCGCGg -3' miRNA: 3'- -CGU---GGUCGUCGGG-GC-ACCGGuCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 63593 | 0.74 | 0.175601 |
Target: 5'- aGCGgCGcGgGGCCCUGUGGCCGGaUGCGg -3' miRNA: 3'- -CGUgGU-CgUCGGGGCACCGGUC-GCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 97869 | 0.74 | 0.184327 |
Target: 5'- cGCgGCCGGCaucgauuuccgAGCCCCG-GGCCGGCGg- -3' miRNA: 3'- -CG-UGGUCG-----------UCGGGGCaCCGGUCGCgc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 58216 | 0.74 | 0.184327 |
Target: 5'- cGCGCCAGCAGCgcgCCCGcGGC-GGCGgGg -3' miRNA: 3'- -CGUGGUCGUCG---GGGCaCCGgUCGCgC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 126064 | 0.74 | 0.188833 |
Target: 5'- gGCGCCAGCcGCCcgCCGgccucGGCgGGCGCGc -3' miRNA: 3'- -CGUGGUCGuCGG--GGCa----CCGgUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 84849 | 0.74 | 0.175175 |
Target: 5'- aGCACCAccGCGGgCCgCGUGGCCaugaccgAGCGCa -3' miRNA: 3'- -CGUGGU--CGUCgGG-GCACCGG-------UCGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 117676 | 0.74 | 0.183882 |
Target: 5'- cGCGCCcggccgGGCccgcggcgaggccGGCCCUGaGGCCGGCGCGc -3' miRNA: 3'- -CGUGG------UCG-------------UCGGGGCaCCGGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 83593 | 0.74 | 0.17096 |
Target: 5'- cCGCCAGCAGCgcgucgcucuccgCCgcggCGUGGuCCAGCGCGa -3' miRNA: 3'- cGUGGUCGUCG-------------GG----GCACC-GGUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 62562 | 0.74 | 0.171377 |
Target: 5'- cCGCCAGCAugcGCCCCG-GcGCCAcGCGCa -3' miRNA: 3'- cGUGGUCGU---CGGGGCaC-CGGU-CGCGc -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 121632 | 0.74 | 0.171377 |
Target: 5'- cCGCuCGGCGGCCgCCGccGGCgAGCGCGg -3' miRNA: 3'- cGUG-GUCGUCGG-GGCa-CCGgUCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 64732 | 0.74 | 0.170544 |
Target: 5'- uGCACCAGguCGGCCCCGacguugcggaaguUGGCCucggccagcucgcGGCGCGc -3' miRNA: 3'- -CGUGGUC--GUCGGGGC-------------ACCGG-------------UCGCGC- -5' |
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23620 | 3' | -63.3 | NC_005261.1 | + | 58117 | 0.74 | 0.175601 |
Target: 5'- cGCGCgAGCAGCCUgccgagCGUGGCCAcCGCc -3' miRNA: 3'- -CGUGgUCGUCGGG------GCACCGGUcGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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