miRNA display CGI


Results 61 - 80 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 97770 0.74 0.193435
Target:  5'- cGCgGCCGGCaucgacucccgAGCCCCG-GGCCGGCGa- -3'
miRNA:   3'- -CG-UGGUCG-----------UCGGGGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 63593 0.74 0.175601
Target:  5'- aGCGgCGcGgGGCCCUGUGGCCGGaUGCGg -3'
miRNA:   3'- -CGUgGU-CgUCGGGGCACCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 58117 0.74 0.175601
Target:  5'- cGCGCgAGCAGCCUgccgagCGUGGCCAcCGCc -3'
miRNA:   3'- -CGUGgUCGUCGGG------GCACCGGUcGCGc -5'
23620 3' -63.3 NC_005261.1 + 88928 0.74 0.188833
Target:  5'- cGCGCCcGCAGCUCUuuuacaagguGUccucGGCCAGCGCGc -3'
miRNA:   3'- -CGUGGuCGUCGGGG----------CA----CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 1179 0.74 0.171377
Target:  5'- cGCGCC-GCGGCCggggCCGgGGCCGGgCGCGg -3'
miRNA:   3'- -CGUGGuCGUCGG----GGCaCCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 83690 0.73 0.202933
Target:  5'- cGCGCCgccgaGGCGGCgCCGcaGCCAGCGCa -3'
miRNA:   3'- -CGUGG-----UCGUCGgGGCacCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 121851 0.73 0.217939
Target:  5'- gGCGCCAGCAGCCCgCGgcucccGCCgAGcCGCa -3'
miRNA:   3'- -CGUGGUCGUCGGG-GCac----CGG-UC-GCGc -5'
23620 3' -63.3 NC_005261.1 + 93222 0.73 0.210821
Target:  5'- aGCGCCAGCgcggcaaaaaagcGGCCgCCGUcgccuucgaccggcGcGCCAGCGCGc -3'
miRNA:   3'- -CGUGGUCG-------------UCGG-GGCA--------------C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 122230 0.73 0.204881
Target:  5'- --uCCAgGCGGCCCCGacgcgcaucagcagGGCCAGCGCc -3'
miRNA:   3'- cguGGU-CGUCGGGGCa-------------CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 133282 0.73 0.21233
Target:  5'- gGCGCCGGCGcccGCCUCGUGGCCgccaaggacgacuGGCuGCu -3'
miRNA:   3'- -CGUGGUCGU---CGGGGCACCGG-------------UCG-CGc -5'
23620 3' -63.3 NC_005261.1 + 43410 0.73 0.198134
Target:  5'- gGCGCCgggGGCGGCCuCCGccGCCGGCGgGg -3'
miRNA:   3'- -CGUGG---UCGUCGG-GGCacCGGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 97534 0.73 0.207833
Target:  5'- cGCgAUCGGCGGCCCCGgcgGuGCCGGCcCGu -3'
miRNA:   3'- -CG-UGGUCGUCGGGGCa--C-CGGUCGcGC- -5'
23620 3' -63.3 NC_005261.1 + 3855 0.73 0.198134
Target:  5'- gGCGCCGGC-GCCgCGcGGCCGGCGa- -3'
miRNA:   3'- -CGUGGUCGuCGGgGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 2110 0.73 0.217939
Target:  5'- aGCAgCAGCAcGCCCUGcGcGCCgAGCGCGc -3'
miRNA:   3'- -CGUgGUCGU-CGGGGCaC-CGG-UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 54302 0.73 0.207338
Target:  5'- gGCGCCGGUuaacaccAGCUCCagcaaggcGUGGCCgAGCGCGu -3'
miRNA:   3'- -CGUGGUCG-------UCGGGG--------CACCGG-UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 13218 0.73 0.198134
Target:  5'- aCugCAGCacgaagacguagAGCCCCGaggccgaGGCCGGCGCGc -3'
miRNA:   3'- cGugGUCG------------UCGGGGCa------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 118637 0.73 0.212834
Target:  5'- cGCGgCGGCgcucugGGCCCCG-GGCC-GCGCGc -3'
miRNA:   3'- -CGUgGUCG------UCGGGGCaCCGGuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 59480 0.73 0.202933
Target:  5'- aGCGCCGGCgcGGCCgCCGc-GCCAGCgGCGg -3'
miRNA:   3'- -CGUGGUCG--UCGG-GGCacCGGUCG-CGC- -5'
23620 3' -63.3 NC_005261.1 + 33570 0.73 0.208328
Target:  5'- cCGCCAGCccugccAGCCCCGcgagcaccaggggcgGcGCCGGCGCGg -3'
miRNA:   3'- cGUGGUCG------UCGGGGCa--------------C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 58764 0.73 0.207833
Target:  5'- cGCGCCgagAGC-GCCCCcagcgcgccGGCCAGCGCGc -3'
miRNA:   3'- -CGUGG---UCGuCGGGGca-------CCGGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.