miRNA display CGI


Results 81 - 100 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 43410 0.73 0.198134
Target:  5'- gGCGCCgggGGCGGCCuCCGccGCCGGCGgGg -3'
miRNA:   3'- -CGUGG---UCGUCGG-GGCacCGGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 97534 0.73 0.207833
Target:  5'- cGCgAUCGGCGGCCCCGgcgGuGCCGGCcCGu -3'
miRNA:   3'- -CG-UGGUCGUCGGGGCa--C-CGGUCGcGC- -5'
23620 3' -63.3 NC_005261.1 + 3855 0.73 0.198134
Target:  5'- gGCGCCGGC-GCCgCGcGGCCGGCGa- -3'
miRNA:   3'- -CGUGGUCGuCGGgGCaCCGGUCGCgc -5'
23620 3' -63.3 NC_005261.1 + 58764 0.73 0.207833
Target:  5'- cGCGCCgagAGC-GCCCCcagcgcgccGGCCAGCGCGc -3'
miRNA:   3'- -CGUGG---UCGuCGGGGca-------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 83690 0.73 0.202933
Target:  5'- cGCGCCgccgaGGCGGCgCCGcaGCCAGCGCa -3'
miRNA:   3'- -CGUGG-----UCGUCGgGGCacCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 122230 0.73 0.204881
Target:  5'- --uCCAgGCGGCCCCGacgcgcaucagcagGGCCAGCGCc -3'
miRNA:   3'- cguGGU-CGUCGGGGCa-------------CCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 13218 0.73 0.198134
Target:  5'- aCugCAGCacgaagacguagAGCCCCGaggccgaGGCCGGCGCGc -3'
miRNA:   3'- cGugGUCG------------UCGGGGCa------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 99702 0.72 0.262623
Target:  5'- cGCGCCAGCuccGCCacggucgcgcgCGUGGCCgcgucaGGCGCGu -3'
miRNA:   3'- -CGUGGUCGu--CGGg----------GCACCGG------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 60085 0.72 0.228462
Target:  5'- gGCugCgugGGCAGCagcaCGcUGGCCAGCGCGc -3'
miRNA:   3'- -CGugG---UCGUCGgg--GC-ACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 64114 0.72 0.262623
Target:  5'- gGCACgGGCGGCa-CGUGccgcgcggccGCCAGCGCGu -3'
miRNA:   3'- -CGUGgUCGUCGggGCAC----------CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 122013 0.72 0.260821
Target:  5'- gGCAUCAGCGGCCCCauaaagugcgcgaaGcGGCaCuGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGGG--------------CaCCG-GuCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 57946 0.72 0.262623
Target:  5'- gGCACCAGC-GCCCgUGUGcgcacGCCGGCGaCGc -3'
miRNA:   3'- -CGUGGUCGuCGGG-GCAC-----CGGUCGC-GC- -5'
23620 3' -63.3 NC_005261.1 + 68269 0.72 0.262021
Target:  5'- cGCGCCuGCgcccgcgcggcggGGCCCCGgccGCgGGCGCGg -3'
miRNA:   3'- -CGUGGuCG-------------UCGGGGCac-CGgUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 93038 0.72 0.262021
Target:  5'- cGCGCaCAcGCGGCCCuCGaagcuguucucgcUGGCCAcGCGCGc -3'
miRNA:   3'- -CGUG-GU-CGUCGGG-GC-------------ACCGGU-CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 76027 0.72 0.233336
Target:  5'- aGCGCCgcgGGC-GCCCCGcgcgccaucagcgUGGCCGGCGgGc -3'
miRNA:   3'- -CGUGG---UCGuCGGGGC-------------ACCGGUCGCgC- -5'
23620 3' -63.3 NC_005261.1 + 10906 0.72 0.262623
Target:  5'- gGCGgCGGCAGCgCCGccGCCGGcCGCGa -3'
miRNA:   3'- -CGUgGUCGUCGgGGCacCGGUC-GCGC- -5'
23620 3' -63.3 NC_005261.1 + 115831 0.72 0.228462
Target:  5'- uGCGCCAGCuugggcgcguuGGCCCgCGcGGCCcccgccgaGGCGCGc -3'
miRNA:   3'- -CGUGGUCG-----------UCGGG-GCaCCGG--------UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 16648 0.72 0.228462
Target:  5'- -aACCAGCAGUCCCc-GGCUGGCaGCGa -3'
miRNA:   3'- cgUGGUCGUCGGGGcaCCGGUCG-CGC- -5'
23620 3' -63.3 NC_005261.1 + 32419 0.72 0.233883
Target:  5'- cCGCCGGCgacgggAGCCCCGccGGCCugGGCGCc -3'
miRNA:   3'- cGUGGUCG------UCGGGGCa-CCGG--UCGCGc -5'
23620 3' -63.3 NC_005261.1 + 1442 0.72 0.233883
Target:  5'- aGCACCAGCGgcggcGCCUCGgcgugcGGCuccagCAGCGCGg -3'
miRNA:   3'- -CGUGGUCGU-----CGGGGCa-----CCG-----GUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.