miRNA display CGI


Results 1 - 20 of 512 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23620 3' -63.3 NC_005261.1 + 79160 1.09 0.000543
Target:  5'- aGCACCAGCAGCCCCGUGGCCAGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGGGCACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 70814 0.9 0.012443
Target:  5'- cGCGCCGGCGGCCCCGggcGcGCCGGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGGGCa--C-CGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 67419 0.87 0.020087
Target:  5'- cCGCCAGCAGCgCCCGcGGCCAGCGCc -3'
miRNA:   3'- cGUGGUCGUCG-GGGCaCCGGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 31464 0.83 0.040997
Target:  5'- aGCGCCGGCGGCCUgaGUGGCCGccgguGCGCGg -3'
miRNA:   3'- -CGUGGUCGUCGGGg-CACCGGU-----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 50339 0.82 0.047981
Target:  5'- uGCACCAGCAGCCgCCGguaGGCC-GCGCc -3'
miRNA:   3'- -CGUGGUCGUCGG-GGCa--CCGGuCGCGc -5'
23620 3' -63.3 NC_005261.1 + 1895 0.82 0.050558
Target:  5'- cGCGCCAGCGcGCgCCGcucaGGCCAGCGCGc -3'
miRNA:   3'- -CGUGGUCGU-CGgGGCa---CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 30350 0.82 0.051896
Target:  5'- cGCGCUcGCGGCCCUGaaGGCCGGCGCGc -3'
miRNA:   3'- -CGUGGuCGUCGGGGCa-CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 53573 0.81 0.05612
Target:  5'- cGCACUAGCGGCCgCG-GGCCGGCgGCGc -3'
miRNA:   3'- -CGUGGUCGUCGGgGCaCCGGUCG-CGC- -5'
23620 3' -63.3 NC_005261.1 + 133827 0.81 0.057601
Target:  5'- gGCGCUGcGCGGCCgcgugcgcgCCGUGGCCGGCGCGc -3'
miRNA:   3'- -CGUGGU-CGUCGG---------GGCACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 30218 0.8 0.074644
Target:  5'- cGCGCUGGCGGCgcgaaCCGUGGCCccgcuGGCGCGg -3'
miRNA:   3'- -CGUGGUCGUCGg----GGCACCGG-----UCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 32527 0.79 0.076594
Target:  5'- cGCGcCCGGCcccGGCCCCGgccgcggcgcgGGCCGGCGCGc -3'
miRNA:   3'- -CGU-GGUCG---UCGGGGCa----------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 39209 0.79 0.076594
Target:  5'- cGCACCGGUAGCCgCCaUGGCCcucGCGCGc -3'
miRNA:   3'- -CGUGGUCGUCGG-GGcACCGGu--CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 106532 0.79 0.08489
Target:  5'- aGCACCgccuccucggcGGCGGCCgCGUccgGGCCGGCGCGc -3'
miRNA:   3'- -CGUGG-----------UCGUCGGgGCA---CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 86015 0.79 0.087094
Target:  5'- uGCGCCAGCAGCCgCUGcUGGuCCAGCucuGCGa -3'
miRNA:   3'- -CGUGGUCGUCGG-GGC-ACC-GGUCG---CGC- -5'
23620 3' -63.3 NC_005261.1 + 62310 0.78 0.089352
Target:  5'- gGCGCgCGGCGGCCCCGcGGucccCCAGCGCc -3'
miRNA:   3'- -CGUG-GUCGUCGGGGCaCC----GGUCGCGc -5'
23620 3' -63.3 NC_005261.1 + 86405 0.78 0.090271
Target:  5'- cGCGCCAGCAGCugcgggcagaaCCCGcacgccaucgccaggUGGuCCAGCGCGa -3'
miRNA:   3'- -CGUGGUCGUCG-----------GGGC---------------ACC-GGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 66328 0.78 0.091433
Target:  5'- -gGCCGuGCAGCCCaCGaggucugcgaucuUGGCCAGCGCGa -3'
miRNA:   3'- cgUGGU-CGUCGGG-GC-------------ACCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 59521 0.78 0.091667
Target:  5'- cGCGCCcuggAGCAGCCCCGccGCCAccgcGCGCGg -3'
miRNA:   3'- -CGUGG----UCGUCGGGGCacCGGU----CGCGC- -5'
23620 3' -63.3 NC_005261.1 + 62393 0.78 0.091667
Target:  5'- gGCACCgucguggggaagAGCAGCUCCGcgcccgccgaGGCCAGCGCGa -3'
miRNA:   3'- -CGUGG------------UCGUCGGGGCa---------CCGGUCGCGC- -5'
23620 3' -63.3 NC_005261.1 + 95766 0.78 0.096466
Target:  5'- gGCGCCGGgAGCCUCGcgcgcUGcGCCGGCGCGc -3'
miRNA:   3'- -CGUGGUCgUCGGGGC-----AC-CGGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.